| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2780 |
|---|
| Symbol | |
|---|
| ID | 3368298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3364992 |
|---|
| End bp | 3368477 |
|---|
| Gene Length | 3486 bp |
|---|
| Protein Length | 1161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637653129 |
|---|
| Product | Phage tail tape measure protein lambda |
|---|
| Protein accession | YP_235857 |
|---|
| Protein GI | 66046016 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5281] Phage-related minor tail protein |
|---|
| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0242921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCA TTGCAGAACT CGGGATCAAG GTTGATTCCG GCGATGCCGC GCAGGCCGCT
ACCGATCTGG ACAAGCTGGC TGCCGCTGGC GGCCGGGCAG AGAAAGCCGC TGATGGGGTT
TCCTCGGGCT TCGACAAAGC ATCGACTGCG GCGTCGAGCC TGTCCTCGGC CGAGGGGAAG
CTCAACGAAA CTACGGATCA GGCGATCGCT CGCCTCACAG CGATGGCCAA GGCTTCGCTG
GATTCGAGCG AGTACTACCA GCGCCTTACA ACCAGTGTCA CCGGAAACAC GGCGGCTGTG
GACGCTTCAA GCTCTTCTGC CAGCAGCCTG GCAGCGCTTC GGCGTCGATT GCAGGCTGAT
TCTGATGCCT TGGTAGGGTC GACCGACCAA CTTGCTGAAT CCACGAAGAA GGCAGCGGCT
GCTACCGGCG TTGAGGCTGA AGGGCTTCAA GCGCTGCTGG GTAAAATCAA CCCTACGCTG
ACAGCGCTCG GCAAACTTGA TGAGCAGCAG GCACAGCTCC AGAAATACAA GAACGCTGGG
CTCATCGATG CCGATACGTT CAAGGAGTAC TCCACCCGGA TTGACGCGTC CCGTCAGAAG
CTTGGTGAGT TCGGTGAAAG CGTCAAAAGC GCGGGCGTAT CAGCTGCACA GACTCAGGCT
GCGTTGCGTC AGTTGCCCAG TCAGTTCAGC GATATCTTCA CAAGCCTCAT AGGTGGGCAA
AATCCGCTGC AGGTTTTCCT CCAGCAAGGT ATGCAGATCA AAGACTCGTT CGGTGGTATT
GGACCGACGA TTGATGTCCT CGGCGGAAAG ATCAAATCCA TTCTCGGTAT AGGCGGTGGA
ATCGGTTCGA TTGGTGACGC CTTGCAAGCA GTAGGTAGCG GCGGTAAGGC TGCTGCAGAA
GGTGCTGAGG CTGCGGGCGA TGGTATCGGA AGCCTTGCGG AGGGGGCGAA CACGGCAGCT
GACGCTGGCA AGAACGCCAA AGAGGCAGCT GATGCGCTCA GGGCGGCAGG GGGTGGTCTT
AGCGTTGGTA TTGGTGCAGT CCTCGTAGGT GCCGCAGCTG CAGCCGCCGC GCTCGTTGCA
TTGGGGGTGG CATATAAGCA GGGGAGCAGC GAGGCAACCG CGTATACCAC TGCCTTGATC
ATGACAGGCA ACACAGCAGG CACAACCGCT GGACAGCTCA GCGACATGGC GAGAGCTGTT
TCCAGCGCCA ATGGGACAGT GAATGAAGCT TCGCAGACCC TTACCTTGCT TTCTGGGTCG
ACCCGGATCT CAGCATCGTA TTTTCAGATG ATTGCTACTG CCGCCGCCAA CATGGAAGAC
GCGACAGGGA AGTCGACTGC GGAGACCGTT AAGAACTTCG AGAAGCTCGC CAAGGAGCCT
CTGAAGGCCT CATTGGAGTT CACGGAGCAG TTGAACTACC TGACTGCGGC GACCTATTCG
CAGATTGCCG CGCTTGAGCG CCAAGGGCAG ACCCAGGCAG CAGCAGAGGT GGCATTTAAG
TCGTATGCCG ACGCGACAAA TACCCGGACC GAACAAATAA CCGCGAACCT TGGGATTCTT
GAGGCTGGCT GGAAAAAAGT AGGCGACAAC GCGAAACTTG CTTGGGACGC GATGCGGGAT
GTCGGGCGAG ATCAAAGTCT CGACGAGCAA ATAACCAACA CCAAAAAGAT TCTTGAGGAT
CGGAAAACAG GCTGGCTGTC CGGTCTGTTT GAGGGAAGCG AATCCACAAG GGTGCTGCAG
GATCGGCTTA AGCTTCTCGA GAAAGCTCGA GACGTTCAGG CAGGAGAGGC CAAGAAAACT
GGTGAACAAC AAAGCGCACA GCGCGCCGCG GTGCTTGCTG CGACGAAGGT CGACGAGCTG
GAAAAGTCGT CCAGGACTAA TGCGGAGAAA AGGTCAGAGG CTCTCAAGGC ATATGAGAGA
AATCTGGAGG CGATTAGAAA GGTCAACCCG ACAGACGATC GCCTCAAGCC GGAAAACGTT
TCAAAGATAA AGAGCAACAT CGCCGATCAA TTCAAGGATC CGGCGAAACC TACGTCCGCA
TTGGATATGA CCGCGTTCAA CACAGCGCAA AATCAGCTCA AGTCGATAAA CGGTTATTAC
GACGGCATCC AGAAGGAGTT GGAGGCGTCG CAGAAAGCCG GGCTGATTTC CGCTGAGTCT
TACGCCAGCC AGCGTGCAGC AATCATAGAT CAGCAGAAAG GCGATATCAC TTCTGCCTAT
CAGGTTGAAA TTGATGCGCT TGAGACGCTC AGGGGCAAGG CGTCTACCAG CGCTGAGCAG
CGAATCCAGC TCGACCAAAA GATCGCCGAC GCTCGAACTT CGATGTTGGA GGCGCAGAAG
AAAGCTGAGA CTGAACAGGA AGTTCTTGCC ACATCAGAAA AGGGCAGGCT CGAAAAACAG
CGTTTGGCTG TGGCTGCCTA TACCGCAGCA CTGGAGCAGC AGGTAAAAAC CTTGCGCGAG
CAGGGGCAGC GATCTGCTTC CTCTCTTGGC ATGGGGGATC GTCAGCGTGG GCTGACGGAC
CAGCAGAACT CCGTAGATGA CCGGATTAAC CAGCAGAAGG TCGAGCTGGC CAACCAATAC
GGTGATGGCT CTCGGGGGAT GAGCCTCGAC GAGTACAACC TGAAGCTGGC TGCGCTCAAC
AAAAATCAGC AGGATCTACG CGACGCGGTC CAGGCCAGCT ATGACTACAT GACCGTTGCC
CAGGGCAGTT GGAGTGCTGG CGCATCATCG GCCTTCCAGA ACTATCTGGA ATCGGCCAGG
GACGTGGCCG GGCAGACCAA GAGCCTGTTC ACGAGTGCGT TCAGCAGCAT GGAAGATTCG
GTCGCAAACT TCGCGATAAC TGGCAAGGGG TCGTTTTCAG ACTTTACCAA ATCAATCTTG
GCCGACATGG CAAGGATTGC TACCCGTCAA GCAAGCTCAG CGCTGCTGAG CAGTCTGGTA
GGTGCTGCCA CCAGCTATTT TACTGGCGGC ACCGGCAACG GGCTTGCATC AGGCTCGGCA
GGCGCTATCT CATCAAACGC TGGCGCGAGC GCGGCAGGCT ACAGCAACTC AGCATTGAGC
GGCTGGTCAG GAGTGGCCCA GGCCAAAGGC GGTGCCTGGT CCAACGGCGT GCAGATGTTC
GCCAACGGCG GGGCGTTCAC CAACAGCATC GTCAGCAAGC CAACAGCGTT CGGCATCTCT
GGCGGCGGAG TTGGGGTTAT GGGTGAGGCG GGCGACGAGG CAATCATGCC GCTCACTCGC
ACTCCCAGCG GCCAGCTTGG CGTCCGCGCG CTGAGCGGAG GCGGCAGTAG CGAAAGCAAC
ACCTACAACT TCCCCGTCTC GGTATCTGTC CAGACGTCTG GCGATTCGGG CAGCTCAAGC
ACGCAGGAAG CGTCCACTCA GCTCGGCAAG GGCATTCAGC AGGCGGCAAA AACCGAGGCC
GAGACTGCAA TCGCTCGCGC GCTGCAACCT GGTGGTTCGA TCTGGAGGCT CACAAATGGC
AGGTAA
|
|---|
| Protein sequence | MTTIAELGIK VDSGDAAQAA TDLDKLAAAG GRAEKAADGV SSGFDKASTA ASSLSSAEGK
LNETTDQAIA RLTAMAKASL DSSEYYQRLT TSVTGNTAAV DASSSSASSL AALRRRLQAD
SDALVGSTDQ LAESTKKAAA ATGVEAEGLQ ALLGKINPTL TALGKLDEQQ AQLQKYKNAG
LIDADTFKEY STRIDASRQK LGEFGESVKS AGVSAAQTQA ALRQLPSQFS DIFTSLIGGQ
NPLQVFLQQG MQIKDSFGGI GPTIDVLGGK IKSILGIGGG IGSIGDALQA VGSGGKAAAE
GAEAAGDGIG SLAEGANTAA DAGKNAKEAA DALRAAGGGL SVGIGAVLVG AAAAAAALVA
LGVAYKQGSS EATAYTTALI MTGNTAGTTA GQLSDMARAV SSANGTVNEA SQTLTLLSGS
TRISASYFQM IATAAANMED ATGKSTAETV KNFEKLAKEP LKASLEFTEQ LNYLTAATYS
QIAALERQGQ TQAAAEVAFK SYADATNTRT EQITANLGIL EAGWKKVGDN AKLAWDAMRD
VGRDQSLDEQ ITNTKKILED RKTGWLSGLF EGSESTRVLQ DRLKLLEKAR DVQAGEAKKT
GEQQSAQRAA VLAATKVDEL EKSSRTNAEK RSEALKAYER NLEAIRKVNP TDDRLKPENV
SKIKSNIADQ FKDPAKPTSA LDMTAFNTAQ NQLKSINGYY DGIQKELEAS QKAGLISAES
YASQRAAIID QQKGDITSAY QVEIDALETL RGKASTSAEQ RIQLDQKIAD ARTSMLEAQK
KAETEQEVLA TSEKGRLEKQ RLAVAAYTAA LEQQVKTLRE QGQRSASSLG MGDRQRGLTD
QQNSVDDRIN QQKVELANQY GDGSRGMSLD EYNLKLAALN KNQQDLRDAV QASYDYMTVA
QGSWSAGASS AFQNYLESAR DVAGQTKSLF TSAFSSMEDS VANFAITGKG SFSDFTKSIL
ADMARIATRQ ASSALLSSLV GAATSYFTGG TGNGLASGSA GAISSNAGAS AAGYSNSALS
GWSGVAQAKG GAWSNGVQMF ANGGAFTNSI VSKPTAFGIS GGGVGVMGEA GDEAIMPLTR
TPSGQLGVRA LSGGGSSESN TYNFPVSVSV QTSGDSGSSS TQEASTQLGK GIQQAAKTEA
ETAIARALQP GGSIWRLTNG R
|
|---|
| |