Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2754 |
Symbol | |
ID | 3368271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 3342197 |
End bp | 3342856 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637653102 |
Product | regulatory protein, TetR |
Protein accession | YP_235831 |
Protein GI | 66045990 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.396057 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0231562 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTCAGC CAACCACCTC GCTACCCACT CCCTCACTCG CCAGGCCCCG GCGTCCCGGC CGGCCGCCAA AGGTTGATCG CGATAATCTC GAGACCCGCG AGGCGCTGCT GCGCCGCGGT CTGGAAGTGC TCACCGAACA GAGTTTTTCG GCCACAGGGC TTGATTACAT CCTCAAGGAA GTCGGCATTC CCAAAGGGTC GTTCTATCAC TACTTCCCCA GCAAGGAAGC CTTTGGCCGG GCGGTGCTGG ATGAGTACGC GCGCTATTTT GCGCAGCGGC TGGACCGCTG GCTGCTGGAT GAAGCGCTTT CGCCACTGGA GCGACTGGTC GGCTTTGTGC AGAGCGCCAA GGGCGGTATG GCGCGACACG ACTATCGACG CGGTTGCATG GTCGGCAATC TGGGCCAGGA AATCAGTCTG TTACCGGACG GATTTCGCGA GGCACTGGAA CAGACGCTGC TGGACTGGCA GTCGAAACTG GCGGGTTGTC TGAGGGCTGC GCAATCAATG GGCGAGTTGG CTGCAGACGC TGATTGCGAT GAGCTGGCCG CGTTTTTCTG GATCGGCTGG GAGGGCGCAG TGCTGCGTGC CCGGCTGGTT AAAAGCGCTA CACCATTGAA CACGTTCATT GCCGGCTACC TTCGCGGTTT GCCGCAATGA
|
Protein sequence | MTQPTTSLPT PSLARPRRPG RPPKVDRDNL ETREALLRRG LEVLTEQSFS ATGLDYILKE VGIPKGSFYH YFPSKEAFGR AVLDEYARYF AQRLDRWLLD EALSPLERLV GFVQSAKGGM ARHDYRRGCM VGNLGQEISL LPDGFREALE QTLLDWQSKL AGCLRAAQSM GELAADADCD ELAAFFWIGW EGAVLRARLV KSATPLNTFI AGYLRGLPQ
|
| |