Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2730 |
Symbol | |
ID | 3368247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 3313111 |
End bp | 3314433 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637653078 |
Product | outer membrane porin |
Protein accession | YP_235807 |
Protein GI | 66045966 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.530004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAAGC TCGCTCATGA TGCAGCAAGC ACTGTGTCAG CTCCCTTTTT TCGTGGAAAA CGTTGTGGCC TTGCGCTGGG CCTGCTGGGT ATCAGTGCCA TTCCCGACCC GTCACAGGCG CAGGGTTTTC TGGATGACAG CCATGGCACA CTGACGCTGC GCAACTATTA TATGGACCGC GATTACAAGG ATGATGGCAC CAGGACTGCG ACTCGGGAGT GGGCGCAGGG CTTCATCATG AATGCGGAGT CCGGCTTTAC CCAAGGGCCG GTGGGGTTCG GCCTCGATGC GCGAGCGCTG GTCGGCGTGA AGCTGGATTC CTCGCCAGAC CGCAGCGGCA CCGAGCTGTT GCCGGTATCC GCCAGTGATG GCCGGGCGGC TGACGAGTAT TCGCGGCTGG CCCTGACCGG CAAGCTGAAA TTCCACGAAA CCACGCTCAA GACCGGTGAC GTGTCGATTT TCCTGCCATT CGCCTTCGCC AGCCCCTCGC GACTGTTGCC GCAGACCTTC CGTGGCACCA CGCTGACCTC GAAGGATATA GATGACCTGA CCCTCCATGC GGGCTACATC GACCGCGTCA ACAAGCGTGA CTCCAGCAAC TACCAGCCCA TCAGCATCGC TTCACCGAAC CGCCGTTTCA ACGGGGCGGC AACGTCGTCG CACATGGCTT ATGCCGGAGG CGATTATCAG GTCAACAAGG ACCTGAGCCT GCGTGTGTAT CACGCCGAAG TAGACGATCT CTATACCCAG AACACTCTGG CCCTGTTGCA CAAGCTGGCG ATTGGCGACG GCGAACTGAC CACCGATCTG CGCAGCTTTT TCAGCCGCGA TACCGGCAGC GCGAAAGCCG GCGAAGTCGA CAACCAGAAC CTGTCCGCGT TGCTCGGCTA CAGGTGGGGA GGGCACAGCG TCAGCCTTGG CTACATGCAT TCCAGTGGCG ACACGGCGAC GCCTTATGTC TCGGGCACCG AGCTGATGGG GCTGAGCGAG ATGACCATGA GCTCTGACTT CCTCAACGCC AAGGAGCGCA CCTGGCAAGC TATCTACGAC TATGACTTCA CGGCGGTCGG GCTGGTCGGG CTGCGCAGTC GCCTGCGTTA TGTGCGCGGC GACAACATCG AGCTGGCCGC TTTCAATGCC GATGATCGCA AGGAGCGTGA GTTTCAGATG GAGCTGGGCT ACGTTGTGCA AAGCGGTCCA CTGAAGAACG TCGGGCTGCT GGCGCGCAAG TCGATCTATC GCAACGATTT CCCGGCAGGT GCAGCCTTTC GTGACGAGAA CCAGACACGC TTCATCGTGC AATACAGCTT GCCGCTCTGG TAA
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Protein sequence | MSKLAHDAAS TVSAPFFRGK RCGLALGLLG ISAIPDPSQA QGFLDDSHGT LTLRNYYMDR DYKDDGTRTA TREWAQGFIM NAESGFTQGP VGFGLDARAL VGVKLDSSPD RSGTELLPVS ASDGRAADEY SRLALTGKLK FHETTLKTGD VSIFLPFAFA SPSRLLPQTF RGTTLTSKDI DDLTLHAGYI DRVNKRDSSN YQPISIASPN RRFNGAATSS HMAYAGGDYQ VNKDLSLRVY HAEVDDLYTQ NTLALLHKLA IGDGELTTDL RSFFSRDTGS AKAGEVDNQN LSALLGYRWG GHSVSLGYMH SSGDTATPYV SGTELMGLSE MTMSSDFLNA KERTWQAIYD YDFTAVGLVG LRSRLRYVRG DNIELAAFNA DDRKEREFQM ELGYVVQSGP LKNVGLLARK SIYRNDFPAG AAFRDENQTR FIVQYSLPLW
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