| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2711 |
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| Symbol | |
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| ID | 3368228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3291984 |
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| End bp | 3293954 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637653059 |
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| Product | GGDEF |
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| Protein accession | YP_235788 |
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| Protein GI | 66045947 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.260718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAAA AACTACCGGG TGCCTTGCGT GCCCTGATGT CTGTGCCTGC TGATAACCCC
AGGTTGTTGC AGGCCCAGTA CGTTGCGTTG TCCCGACAAC TGCCGTTGAT GTACTTCGTG
CTGCTGGTCA ATACCTGGGC GTTGGCGTTC ACTCATTGGC GAACCGCTCC GGTGTGGCTG
ACGCTGCTGG TCCCTGCGCT GCTCACGGTT ATCTGTGGCG TCCGTGCAAG CAAATGGTTG
CGCACTGTAA ACCGGCCGCC ACCCGCTCCG GCGATCATTC TGGCCACGCT GCGCGGTACG
CATGGTCTGG CGGGCGTGAT AGCGGCCGGG TTTGCCGCCT GGTCCCTGTC GCTTTACCCC
TATGGCGATG CCTATTCCCA GGCGCATGTC GCGTTTTTTA TGGGCATTAC GGTGATTGTC
TGCATCTTCT GCATGATGCA CTTGCGGCCC GCAGCGCTGA CCACCGCGCT GGTCGTCAAC
ACCGCCTTCG TGATTTTCTT CGCCTCGACT TACAACATTA CCTTTATCGC CACGGCGGTG
AATATCGTGC TGGTGTCGAT CGGCATGCTG ATCATTCTTC ATTACCAGTA CCGCGATTTC
ACCAGTCTGG TGAATGTGCA GGTAAAGACC GAGCAACTGA GCAACGAGAA CCTGCTGCTG
GCCAATCAGG ACAGCCTGAC GGGCCTGCCC AATCGTCGGC AGTTCTTTCA GACTTTGGAT
ACCGCGATGA CCGAGGCAAT GGCGCAGCGC AGCGGGCTGG CAGTGGGCGT GTTGGACCTG
GACGGGTTCA AGCCGGTCAA TGACCTTTAT GGTCATCGAA TCGGCGACCG TCTGCTGATG
CTGGTGGCTG AACGCCTGAC CAGCGCCTCA AGCGACAAGG TGCATGTATC GCGACTGGGC
GGTGACGAGT TCGCGCTGGT GATCAAGGGA GACATCGACA GCGAGGCATT GCAGGCGTTT
GGCAAACACC TGTGTGACCT CATGCACGAA AGCTTCGAAC TGTCGGACAT GCCGATCCAG
ATTGGCGCGA CACTGGGCCT GGCGACGTAC CCGGCTACCG CAGATAACGC GACCCAGCTG
TTCGAATTTG CCGATTACGC GCTGTATCAG GGCAAAAACC ATAACCCCGG AACCACCTGC
CTGTTCTCCG CTAGCCACCG TGAGCAGTTG CATGCCGACG GCGTTACCGA ACAGGCCTTG
CGGCGCGCCA ATCTGGAAAC CGAGTTCCAC GTATTGTTTC AGCCGATCAT TGAAAGCTGC
ACGCGCGAAA CGGTGGCGTT CGAGGCGCTG GCGCGCTGGA ACAGCCCGGA ACTGGGGGCT
GTTTCGCCGG CGCATTTCAT TCCGATCGCC GAGCGCATCG GCATGATCAA CAAGCTCACT
GTGCCCTTGT TGACCCAGGC GCTAAGCATG GCCCTATCGT GGCCTGCGCC TGTCAGGCTG
TCGTTCAATC TGTCCGCGCA CGACTGTGCG ACCTGGGAAA GTGTCAACAG AATTGTCGAG
ATCATCGAAC ACAGCGGCTT CGATGCGTCG CGGCTCGATC TGGAAATCAC CGAAACGGCG
GTCATGCAGG ATATCGCCCA GGTGCAGCAG GCCATTACCC AGTTCCGCAA GCTGGGTTGC
GGCATCTCGC TGGACGACTT CGGCACCGGC TTCTCCAGCC TCAGTCAACT GCACGCGCTG
GCGCTGACCA AGCTGAAGAT CGACCGCAGC TTTGTCACCG GGGTGCATAA CAACCCGGCC
AGTTACAAGA TCGTCAAATC GCTGGTTGCC TTGAGTCTGG ACATGTCGCT GGGTTGCGTG
ATCGAAGGCG TCGAAACACA GGATGAGTTG AATGCATTGA CCACCCTGGG TTGTACGATG
GTGCAGGGTT ACTTCTACAG CCCGCCGATC AGTTTTGCAG AGACGCTGGC ATGGATTGAA
ATACCCGATG AAGAGCGCAC CTTCGGTTAC GCCGCTTCGT GCCCCCTCTG A
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| Protein sequence | MLKKLPGALR ALMSVPADNP RLLQAQYVAL SRQLPLMYFV LLVNTWALAF THWRTAPVWL
TLLVPALLTV ICGVRASKWL RTVNRPPPAP AIILATLRGT HGLAGVIAAG FAAWSLSLYP
YGDAYSQAHV AFFMGITVIV CIFCMMHLRP AALTTALVVN TAFVIFFAST YNITFIATAV
NIVLVSIGML IILHYQYRDF TSLVNVQVKT EQLSNENLLL ANQDSLTGLP NRRQFFQTLD
TAMTEAMAQR SGLAVGVLDL DGFKPVNDLY GHRIGDRLLM LVAERLTSAS SDKVHVSRLG
GDEFALVIKG DIDSEALQAF GKHLCDLMHE SFELSDMPIQ IGATLGLATY PATADNATQL
FEFADYALYQ GKNHNPGTTC LFSASHREQL HADGVTEQAL RRANLETEFH VLFQPIIESC
TRETVAFEAL ARWNSPELGA VSPAHFIPIA ERIGMINKLT VPLLTQALSM ALSWPAPVRL
SFNLSAHDCA TWESVNRIVE IIEHSGFDAS RLDLEITETA VMQDIAQVQQ AITQFRKLGC
GISLDDFGTG FSSLSQLHAL ALTKLKIDRS FVTGVHNNPA SYKIVKSLVA LSLDMSLGCV
IEGVETQDEL NALTTLGCTM VQGYFYSPPI SFAETLAWIE IPDEERTFGY AASCPL
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