Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2603 |
Symbol | |
ID | 3368120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 3057159 |
End bp | 3058328 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637652951 |
Product | secretion protein HlyD |
Protein accession | YP_235680 |
Protein GI | 66045839 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.22725 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.133946 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGGCT TTTTCCGGAA ATTGAATGTC CGCAAAATCC TTTTGAGAAT CGTCCTGATC GATCTGACGG TTTCGCTGGC AGGCTATGCC TTCTATAAGG GCGCCAGCGG AGAAGAAGAG ACTGCCTTTC TATCAGCCGC AGCAGAAGTT ACGGACATTG AGTACGCCGT ATCCGCACAG GGTGTGCTTC AGGGGCGTAA TCAAGTGGAC GTTGGCGCCC AGGTTTCCGG GCAATTGCAG TCCCTGAAAG TCAAACCAGG TGACCAGGTC AAAAAAAACC AGCTGTTGGC AGAGATCGAT CCACTGCCCG CCAGAAATGC TCTGCGCCAG GCGGTTGTCA AGATCGAACA ACTCACGGCT GAGCGGGACG CGACACTGCA CAGGTTGAAA CTTGCCGAGT CGAATGATCG TAGATATCAG GAATTGGGCG CTACGACGGC GGTTTCCAAA GCGGATCAGG ACAAGGCCCG ATTCGAGCTG GAGACCCAAC GCGCCAACCT GGTGTCGCTC ACCGCACAAT TACACACGGC CCGCGTGCAG GAAGAAGCCG CACGCATCAA ACTCGACTAC ACACGAATCT TCGCACCAAT GGATGGTCAG GTCCTCGCCA TCGTCACTCA GGAGGGCCAG ACAGTCATTG CAGACCAGAC GGCACCGGTC ATTCTGAAGA TGGCGCAACT CGACACCATG ACCGTGAAGG CGCAGGTTTC CGAAGCCGAC GTGCTCAAGA TCAAACCCGG TCTTGCGATT TACTTCACTA TCCCGGGCGA TCCTGACACA CGCTATAACG CCACCCTCAA GGCGATCGAG CCGGGTCCTG TGGACGCTGC AAGCCAGACC GGAGCAACAG CCGAAAGCGG CAAAGCCGTC TTCTACAACG CTCTTTTCGA TGTCCTCAAC CTTGAAAACC GCTTCTACAT CAACATGACC GCTAACGTGC GAATTGTGCT GGAGGCGAAG GAGGGCGTAT TAACGATCCC TGTCGCCGCA CTGGGTGATC GGCGGGACGA CGGCACCTAC AGTGTAAGGG TGCTGGGTGA AGGTAACGAG GTCAGAACAG CCTACGTAGG GCCGGGTATC AATAACCAGG TCAGGGTCGA AATACGTTCG GGGCTTAAAG CCGGCGACAG AGTGGTCATC GGAGAGCGGG GCGGTGTGGA AGGTGTTTAA
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Protein sequence | MVGFFRKLNV RKILLRIVLI DLTVSLAGYA FYKGASGEEE TAFLSAAAEV TDIEYAVSAQ GVLQGRNQVD VGAQVSGQLQ SLKVKPGDQV KKNQLLAEID PLPARNALRQ AVVKIEQLTA ERDATLHRLK LAESNDRRYQ ELGATTAVSK ADQDKARFEL ETQRANLVSL TAQLHTARVQ EEAARIKLDY TRIFAPMDGQ VLAIVTQEGQ TVIADQTAPV ILKMAQLDTM TVKAQVSEAD VLKIKPGLAI YFTIPGDPDT RYNATLKAIE PGPVDAASQT GATAESGKAV FYNALFDVLN LENRFYINMT ANVRIVLEAK EGVLTIPVAA LGDRRDDGTY SVRVLGEGNE VRTAYVGPGI NNQVRVEIRS GLKAGDRVVI GERGGVEGV
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