Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2568 |
Symbol | |
ID | 3368085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 2981841 |
End bp | 2982596 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637652916 |
Product | short chain dehydrogenase |
Protein accession | YP_235645 |
Protein GI | 66045804 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.459864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGAAT TCTGGAACAA GGCGTTCGAT CTCAATGGCC GTTGTGCGGT CATCACCGGC GGAGCAGCCG GGATTGGCCT TGCCTGTGCC AGCCTGCTGG TCGCGCGCGG CGCGCGGGTC GCACTGCTGG ACCGTGACCC GGCAGTGGCC GAGGTTGCCG CCGGCCTGGG CAGCGGGCAC CTCGGTATCG CGGTCGACCT GCGCCGGGTC GATCAGGTCA ACAGCACCAT CGACAGCGTC TTCGAGCATT TCCAGCGCAT CGATTATCTG GTCAACAGTG CCGGGGTAGC CATGCTGGAC AAGGCTGTCG ACGTCAGCGA AGAGGCCTGG GACACGACGC TGGACATCAA CCTCAAGGCC AGTTTCTTCG TCGCCCAGGC CTGCGCGCGA CACATGCTCG GTCAAGGCAG CGGACGCATC GTCAATCTTG CCTCTCAGGC GGCGGTCATT GGCCTGGACC GGCACGTCGC CTACTGCGCG AGCAAGGCCG CAGTGGTCGG CATGACCAAA GTGCTGGCCA TGGAGTGGGC ACCACACATC AACGTCAACG CCATCTCGCC CACCATCGTC GAGACCGCGC TGGGCAAAAA AGCCTGGGCG GGCGAAGTCG GAGAACGGGC CAAAACGCAG ATCCCGGCAG GCCGCTTCGC CCAGCCGGAG GAAATAGCCG GGCTGGCCCT GTACCTGCTC AGCGACGCCG CCAGCATGAT CACCGGCGAA AACGTAGTGA TCGACGGCGG CTACAGCATC CAGTAA
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Protein sequence | MSEFWNKAFD LNGRCAVITG GAAGIGLACA SLLVARGARV ALLDRDPAVA EVAAGLGSGH LGIAVDLRRV DQVNSTIDSV FEHFQRIDYL VNSAGVAMLD KAVDVSEEAW DTTLDINLKA SFFVAQACAR HMLGQGSGRI VNLASQAAVI GLDRHVAYCA SKAAVVGMTK VLAMEWAPHI NVNAISPTIV ETALGKKAWA GEVGERAKTQ IPAGRFAQPE EIAGLALYLL SDAASMITGE NVVIDGGYSI Q
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