Gene Psyr_2541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2541 
Symbol 
ID3368058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand+ 
Start bp2956344 
End bp2957357 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content64% 
IMG OID637652889 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal 
Protein accessionYP_235618 
Protein GI66045777 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000886627 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGTG ATCAGATTCC CCTCATCGAG CTGCATCAGG TCAGCAAGAC CTTCGGCAAA 
CCCGTGGATG AGCGCTCCCT GCAGGGGCTC CTGCAACGGC TGCACCTTAC GCGCCCGAAA 
CCGCTGACCC ATGCCGTGGA TCGTGTCGAT CTGCGCATTG CGCGCGGTGA AGTGGTCGGG 
CTGGTGGGCG AGTCGGGTTG TGGCAAATCG ACCCTGGGGC GCATGGTTGC CGGGCTGCTG 
CCGGTATCCT CGGGCACCAC ATCGGTAGAC GGCAAACCGC TGGAGAGCCT GACCCCGCAG 
GAGCGCAAGG CGCTGCGCCT GAAAGTGCAG ATGATTTTTC AGGACCCTTC GTCAAGCCTC 
AACCCGCGTC TGCGTGTCGA CCGGATCGTC GGCGAAGGTG CGCTGTTGCA CGGCCTGACC 
GACCGCAAGG GCGCAGATGA TTACGTCAGT GCGCAATTAC AGCGTGCCGG GCTCAGCCCG 
CAATTGCGCC AGCGCTATCC GCATCAGTTC AGCGGTGGCC AGCGCCAGCG CATCGGGATT 
GCCCGGGCGC TGGCGGTGCA GCCGGAACTG CTGGTGTGCG ACGAGTCGGT GGCGGCGCTG 
GACGTGTCGA TTCAGGCGCA GATCCTCAAT CTGTTCATGG ATCTGCGCGA CGAGCTGGGC 
CTGACCTATC TGTTTATCAG CCATGACCTG GGCGTCGTCG AGCACCTCTG CGACCGGGTC 
ATCGTGATGT ACCTGGGTCG TGTGGTCGAG ACGGCATCGG TCGATGACTT GTTCGCGCGG 
GCCAATCACC CGTACACCCA GGCTTTGCTG GCGCAGATCC CGCGCTTCGA TATTCGCAGT 
ACCCGTTATG ACGCGATCCA AGGGGAAATC CCCAGCCCGC TTGACCCGCC TGCCGGGTGT 
CATTTCCACC CTCGCTGCCC GCACGCCATG GCGCGCTGTC GCGAGGAAGT TCCAGCGCTG 
CGGGAGGTTT CGCCGAATCA CCAGAGCGCC TGTCACCTGA ATGACCAACG CTGA
 
Protein sequence
MPSDQIPLIE LHQVSKTFGK PVDERSLQGL LQRLHLTRPK PLTHAVDRVD LRIARGEVVG 
LVGESGCGKS TLGRMVAGLL PVSSGTTSVD GKPLESLTPQ ERKALRLKVQ MIFQDPSSSL 
NPRLRVDRIV GEGALLHGLT DRKGADDYVS AQLQRAGLSP QLRQRYPHQF SGGQRQRIGI 
ARALAVQPEL LVCDESVAAL DVSIQAQILN LFMDLRDELG LTYLFISHDL GVVEHLCDRV 
IVMYLGRVVE TASVDDLFAR ANHPYTQALL AQIPRFDIRS TRYDAIQGEI PSPLDPPAGC 
HFHPRCPHAM ARCREEVPAL REVSPNHQSA CHLNDQR