| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2489 |
|---|
| Symbol | |
|---|
| ID | 3368006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2892304 |
|---|
| End bp | 2894322 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637652837 |
|---|
| Product | Alpha amylase, catalytic region |
|---|
| Protein accession | YP_235566 |
|---|
| Protein GI | 66045725 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0230189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC AGCCATACGG TCCGGATTCC CTGGCCACCG ATGTCCCGCA AGCAACCCTT
CCGCTGTCAC TGACCCAGGC GCTGCAATTA CCCCGCATCG TGATTGAAGA CACGCTGCCG
GTAATCGACG GTGGCCTGTT CGCGGCCAAG GCGATCATCG GGCAACCGGT TACCGTGACC
AGCAAGGTCT ATGCCGATGG GCACGACAAG ATGGCGGTCA ATATCCGCTG GCGTGCTGCC
GATGAAGAAC ACTGGCACAG CGCGCCAATG CGCGAGCTGG GCAATGACAG CTGGGTCGGT
GAATTCACCC CGACCTCGGT CAGCCGCCAT GTGTTTCGCC TCGAAGCCTG GATCGATCAG
TTCGGCAGCT ATCGTTATGA GCTGGAGAAG AAGTTCGGCG CTGGCGTTCC TGTCGATCTG
GAGCTGGAAG AGGGCCGCAT TCATCTGGTG CATGCCGCCG AGCGCAGCCA GAACGAGCAG
CGCCAGCAAA TCGAAGGCCT GCTGGGCCAG CTTGAACAGG GCGATAAAGA CGAGAAAGTC
GCGCTGTTGT TGCACAGCGA AACCGCCAGC CTGATGAAAC TGGCCGACAA TCAGGCCTTC
CTCAGCCGCA GCGTCGAGTT CCCGCTGGAT GTCGAGCGTG AGCTGGCGCA GTTTGCCAGC
TGGTACGAGC TGTTTCCCCG TTCGATGACC GACGATCCGG CGCGCCACGG CACGTTCAAC
GACGTCCATT CGCGTCTGCC GATCATTCGC GACATGGGCT TCGACGTGTT GTATTTCCCG
CCGATTCATC CTATCGGCCG TGCCCACCGC AAGGGCCCGA ACAATTCCCT GACCGCTGGC
CCTGATGATC CGGGCAGCCC GTATGCGATC GGCAGCGAGG ATGGTGGCCA TGAAGCCATC
CACCCGCAGC TGGGCAGTCG TGAAGATTTC CGTCATCTGG TAAAAGCCGC AGCCGAGCAT
GGCCTGGAAA TCGCGCTGGA TTTCGCCATC CAGTGTTCCC AGGATCACCC GTGGCTCAAG
CAGCATCCGG GCTGGTTCTC GTGGCGTCCG GACGGCACGA TCCGTTATGC GGAAAACCCG
CCGAAGAAGT ATCAGGACAT CGTCAACGTC GATTTCTACG CACCAGACGC CATCCCCGGC
CTGTGGACGG AGTTGCGCGA CATCGTTCTG GGCTGGGTCA ACGAGGGCGT GAAAATCTTC
CGCGTCGACA ACCCGCACAC CAAACCGCTG CCGTTCTGGC AGTGGATGAT CGGCGAAGTG
CGCAGTCAGC ACCCCGAGGT GATGTTCCTG GCCGAAGCCT TTACCAAGCC GGCAATGATG
GCGCGCCTGG GCAAGGTCGG TTACAGCCAG AGTTACACCT ATTTCACCTG GCGCAACACC
AAGGCGGAGC TGTCCGAGTA CTTCACCCAG CTCAACGAAG TGCCTTGGCG CGACTGTTAT
CGTCCGAATT TCTTCGTCAA CACGCCCGAC ATCAACCCGC GCTTCCTGCA TGAGTCCGGT
CGTCCCGGGT TTCTGATCCG GGCGGCACTG GCCACCATGG GTTCCGGGCT GTGGGGTATG
TATTCCGGGT TCGAGCTGTG CGAAGCGGCC CCTATTCCCG GCAAGGAAGA GTATCTGGAC
TCGGAGAAGT ACCAGATTCG GGTTCGCGAT TACGCGGCAC CGGGCAACAT CATTGCCGAG
ATCGCGCAGC TCAACCGCAT TCGTCGGCAG AACCCTGCGT TGCAAACCCA CTTGGGTCTG
AAGCTGTACA ACGCGTGGAA CGACAACATT CTGTACTTCG GCAAGCGCTC GGCGGACGGC
AGCAACTTCA TTCTGGTTGC CGTCAACCTC GACCCGTACA ACGCACAGGA AGCGGATTTC
GAGTTGCCGC TGTGGGAAAT GGGCCTGCCG GATGACGCCG CTACGTCGGG TGAAGACCTG
ATGACCGGGC ACCGCTGGAC CTGGTACGGC AAGTATCAGC ACACGCGTCT CGATCCATCC
CAACCGTTTG GAATCTGGCG TATCCAGGCT GCGCAATAA
|
|---|
| Protein sequence | MNEQPYGPDS LATDVPQATL PLSLTQALQL PRIVIEDTLP VIDGGLFAAK AIIGQPVTVT
SKVYADGHDK MAVNIRWRAA DEEHWHSAPM RELGNDSWVG EFTPTSVSRH VFRLEAWIDQ
FGSYRYELEK KFGAGVPVDL ELEEGRIHLV HAAERSQNEQ RQQIEGLLGQ LEQGDKDEKV
ALLLHSETAS LMKLADNQAF LSRSVEFPLD VERELAQFAS WYELFPRSMT DDPARHGTFN
DVHSRLPIIR DMGFDVLYFP PIHPIGRAHR KGPNNSLTAG PDDPGSPYAI GSEDGGHEAI
HPQLGSREDF RHLVKAAAEH GLEIALDFAI QCSQDHPWLK QHPGWFSWRP DGTIRYAENP
PKKYQDIVNV DFYAPDAIPG LWTELRDIVL GWVNEGVKIF RVDNPHTKPL PFWQWMIGEV
RSQHPEVMFL AEAFTKPAMM ARLGKVGYSQ SYTYFTWRNT KAELSEYFTQ LNEVPWRDCY
RPNFFVNTPD INPRFLHESG RPGFLIRAAL ATMGSGLWGM YSGFELCEAA PIPGKEEYLD
SEKYQIRVRD YAAPGNIIAE IAQLNRIRRQ NPALQTHLGL KLYNAWNDNI LYFGKRSADG
SNFILVAVNL DPYNAQEADF ELPLWEMGLP DDAATSGEDL MTGHRWTWYG KYQHTRLDPS
QPFGIWRIQA AQ
|
|---|
| |