| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2485 |
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| Symbol | |
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| ID | 3368002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2886987 |
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| End bp | 2888450 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637652833 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_235562 |
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| Protein GI | 66045721 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.072827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.13209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC GCCTGGCATT CACCTCCCGC CCGACAGGGC TGATTCGTCC ATTCGCGCTG
GGGCTTTGTG TGGTGCTGCT CAGCGCCTGC GCTGTGGGTC CGGATTACCA GAAGCCGTCC
ATGGCCGCAC CCGCGCAGTT CAAGGCTGCG CAGGGCTGGC GTACGGCGAC GCCGAGTGAC
GGGATGGGCA AAGGTGCGTG GTGGGAGGTG TACAAGGACC CGCAACTGAA CGCGCTGGTC
GAGCGCCTTA ACACCTCCAA CCAGACCGTC GCCCAGTACG ATGCGCAGTA TCGACAGGCA
CAGACACTGG TGCGCAGCTC CAGGGCTGCA TTCCTGCCTA CGCTTGACCT GACAACCGGC
AAAACCCGCT CGGGGCAGGG CACAGGCACG TCGAATAGCG GCACGAGTGC CTCGGGGATT
CGCAACAGTT ACAACGCGCA ACTGGGCGTC AGTTGGGAGG CCGATGTCTG GGGCAAGCTG
CGTCGCGGGC TGGAGGCTGA CACCGCCAAT GCTCAGGCAA GTCTTGCGGA CCTGGCCGCG
ATGCGTCTGA GTCTGCAATC GGAGCTGGTA CAGAATTACC TGCAATTGCG CGTGATCGAT
GAACAAAAAC GCCTGCTCGA ATCCACAGTG GATGCCTATC AGCGCTCCCT GACGCTGACG
CAGAACCAGT ACCGGGCCGG TATCTCCGGA AGTGATGCTG TCGCGCAGGC GCAGACGCAG
TTGAAAAGCA CCCAGGCCGA TCTGATCGAT CTGGCCTGGC AGCGTGCGCA ATTCGAGAAT
GCCATCGCGG TACTGATGGG CATGGCACCG GCAGACTTCA ATCTGCCCGC CAGCACCTCG
ATTCCGCAGT TGCCGCAGAT CCCGCCAGGC CTGCCTTCGC AGCTGCTCGA ACGCCGACCT
GACATTGCCG CAGCCGAGCG CTCGGTGATG GGCGCCAATG CCAACATCGG CGTCGCCAGG
GCCGCTTACT ACCCGGACTT CACGCTGAGC ATGAGCGGCG GATACAGTAG CAGTACCTTT
GCCAACTGGA TCAGCCTGCC CAACCGCTTC TGGTCGGTAG GCCCGCAGCT GGCGCTGACC
CTGTTCGACG GCGGCAGGCG CTCGGCCGAG GTTGATCGTA CCGAGGCCGT GTATGACCAG
ACTGTTGCCC AGTACCGGCA GACCGTGCTG AACGGTTTTC AGGAGGTCGA GAACTATCTG
GTTCAGCTCA AGGTATACGA GCAGGAGGCT GCGGTGCGCC AGGAAGCGCT GGTCTCGGCT
CGTGATTCGC TGCGCCTGAC CAACAATCAA TACAAGGCCG GGCTGATCGG TTATCTGGAC
GTCGTCAATG TTCAGGCGAC TGCCTTGAGC AACGAACGCA GTGTGCTCAG CGTGCTGCAA
AGCCGGTTGA TTGCCAGCGT TCAATTGATC GCCGCACTGG GCGGGGGCTG GGATGCCGAA
ACAGGTTTGA CGCTCCGGGA ATAA
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| Protein sequence | MTERLAFTSR PTGLIRPFAL GLCVVLLSAC AVGPDYQKPS MAAPAQFKAA QGWRTATPSD
GMGKGAWWEV YKDPQLNALV ERLNTSNQTV AQYDAQYRQA QTLVRSSRAA FLPTLDLTTG
KTRSGQGTGT SNSGTSASGI RNSYNAQLGV SWEADVWGKL RRGLEADTAN AQASLADLAA
MRLSLQSELV QNYLQLRVID EQKRLLESTV DAYQRSLTLT QNQYRAGISG SDAVAQAQTQ
LKSTQADLID LAWQRAQFEN AIAVLMGMAP ADFNLPASTS IPQLPQIPPG LPSQLLERRP
DIAAAERSVM GANANIGVAR AAYYPDFTLS MSGGYSSSTF ANWISLPNRF WSVGPQLALT
LFDGGRRSAE VDRTEAVYDQ TVAQYRQTVL NGFQEVENYL VQLKVYEQEA AVRQEALVSA
RDSLRLTNNQ YKAGLIGYLD VVNVQATALS NERSVLSVLQ SRLIASVQLI AALGGGWDAE
TGLTLRE
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