| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2482 |
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| Symbol | |
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| ID | 3367999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2879475 |
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| End bp | 2880779 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637652830 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235559 |
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| Protein GI | 66045718 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.179732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.227362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGATT TATTCATGCA ATCGTCTGGC TCCCGTAAAT CCCGTCGCTG GTTGATCAGT
TTGCTGGTCC TGTTGGTCAT CGTCGCCTTG TGCTGGTGGT TCTGGCCTGC GTCCACTTCC
GGCAAGGGGG CCGAGAGCAA CAAGAAGCCC GCTACAAGCG GCATGGCAAG GCCCGGCTTC
GGCGGATCGG CTGTGGCGGT CCCGGTGCGT GTGGCCCCGG CTACCGAAGG TGATTTTCCG
ATCTACTACA AGGCACTTGG CACCGTGACG GCGATGAACA CCATCAATGT GCGCAGCCGC
GTGGCGGGGG AGCTGGTCAA GCTTTATTTC CAGGAAGGGC AGATGGTCAA GGCGGGTGAT
CTGCTGGCTG AAATCGATCC GCGCAGCTAT CAAGTGGCGT TGCAGCAGGC CGAAGGTACG
CTGGCCACCA ACCAGGCGCT GCTCAAGAAC GCTCAGCTCG ACGTGCAGCG TTACCGAGGC
TTGTTTGCCG AGGACAGCAT CGCCAAGCAG ACCCTCGACA CTGCCGAGTC GCTGGTCAAC
CAATACAAGG GCACGATCAA GACCAATCAG GCTGCCGTGG CTGACGCAAA ACTCAACCTG
GACTTCAGTC GCATTCGTGC CCCGATTGCC GGGCGTGTCG GCCTCAAACA GCTGGACGTG
GGTAATCTGG TTGCCGCCAA TGACACCACG GCACTGGCGG TGATTACCCA GACCCAGCCT
ATTTCCGTCG CATTCACGCT GCCTGAAAAG GACCTGTCGA AAGTTATTTC CCGCTACCGC
ACCGGCGACA AGCTGCCGGT CGAAGCCTGG GACCGTGGCG ATACGAAGAT GCAGGCCACC
GGCGTACTGG CCAGCCTCGA CAACCAGATC GACGTGGCTA CCGGCACACT GAAGTTCAAG
GCGCGTTTCG ATAACAGCGA CGAGGTCCTG TTTCCCAATC AGTTCGTCAA TATACGGCTG
CGCGCCGACA CGCTGAAAAA AGTCACGCTG GTGCCGACGG CTGCCGTGCA GTTTGGCACC
GACGGGACCT TTGTCTACGT GCTGGACGGT GACAAGAAGG TCAAGCTCAA ACTGCTGAAG
ACCGGCCCGA GCGACGAGAC ATCCACGGTG ATTACCGAAG GTCTGGCAGC CGGCGAGCGG
GTGGTGCTCG AAGGCACCGA CCGTCTGCGC GACGGTGCCG AAGTCGAAGT CGTCAACGAC
AGCAAGGAAG TCCCGGCTGG CCCGGCTCAG AAGCTGCAAG GCAAGCCTGA CAGCAAGACC
GACAAGTCGG CGGCGCTCGG CAAGGTGGAA AAACCAAACG TATGA
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| Protein sequence | MVDLFMQSSG SRKSRRWLIS LLVLLVIVAL CWWFWPASTS GKGAESNKKP ATSGMARPGF
GGSAVAVPVR VAPATEGDFP IYYKALGTVT AMNTINVRSR VAGELVKLYF QEGQMVKAGD
LLAEIDPRSY QVALQQAEGT LATNQALLKN AQLDVQRYRG LFAEDSIAKQ TLDTAESLVN
QYKGTIKTNQ AAVADAKLNL DFSRIRAPIA GRVGLKQLDV GNLVAANDTT ALAVITQTQP
ISVAFTLPEK DLSKVISRYR TGDKLPVEAW DRGDTKMQAT GVLASLDNQI DVATGTLKFK
ARFDNSDEVL FPNQFVNIRL RADTLKKVTL VPTAAVQFGT DGTFVYVLDG DKKVKLKLLK
TGPSDETSTV ITEGLAAGER VVLEGTDRLR DGAEVEVVND SKEVPAGPAQ KLQGKPDSKT
DKSAALGKVE KPNV
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