| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2435 |
|---|
| Symbol | |
|---|
| ID | 3367952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2818968 |
|---|
| End bp | 2820449 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637652783 |
|---|
| Product | xylulokinase |
|---|
| Protein accession | YP_235512 |
|---|
| Protein GI | 66045671 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00457949 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTTG GAATCGATTG CGGGACCCAG GGCACCAAGG TGCTGGTGCT CGACACCGAA
AGCGGCACCG TGCTGGGCGA AGGCTCGGCG CCGCACAGCC TGATCAGCGA CCATAACGGA
CGCCGTGAAC AGGACGTGCA GCAATGGCTG GACGCCCTGC AACAGGCGAC CCGCGAGGCA
CTGGCAGCGT CGGGCGTTTC CGGTCAGCAG ATTCAGGGCA TCGGGGTCTC AGGCCAGCAA
CATGGCCTGG TGCTGCTCGA TGCTCAAGGC CAGGTACTGC GCCCGGCCAA ACTGTGGTGC
GATACCGAGT CGGCACCGGA AAACCAGCGC CTGCTGGACT TTCTGGGCGG CGCGCAGGGT
TCGCTGCAAC GCCTTGGCCT GGTCATTGCC CCAGGCTATA CCGTGTCGAA ACTGCTGTGG
ACCAAGGAGC AATACCCGGA TCTGTTCGAG CGGATCGACA AGGTGCTGCT GCCCCACGAC
TACCTCAACT ATTGGCTGAC CGGCCGCTGC TGCACCGAGT TTGGCGACGC ATCGGGCACC
GGTTACTTCA ACGTGCGCAC TCGCGAGTGG GACCTGCCGT TGCTCGCGCA CATCGACCCG
AGCGGTCGCC TGGGCAAGGC ACTTCCACAG CTGTTGCAAG CCCATGAACC GGTGGGCGCA
CTGCGTGCTG AGGTCGCCCG GCTGCTGGGC CTGAACCCTG ACGCGCTGGT CTCCAGTGGC
GGCGGCGACA ACATGATGGG CGCGATCGGC ACAGGCAATA TCCAGCCGGG GCTGATCACC
ATGAGCCTGG GCTCTTCGGG CACCGTGTAT GCCTACGCCG ATGAGGCGCA GGTCAGTGAG
CATGAGTCGG TCGCGACGTT CTGCTCATCC TCAGGCGGCT GGTTGCCGCT GATCTGCACG
ATGAACCTGA CCAACGCAAC GACTGCCATT CGCGAGTTGT TCGCCCTCGA CATCGGCGGC
TTCAACCAGG TGGTCGCCCA GGCGCCGATC GGTGCCGAAG GCGTACTGAT GCTGCCCTTT
CTGAACGGCG AACGCGTGCC CGCCCTGCCC GACGCTACCG GCAGCATCGT CGGGCTGGAC
AGCACCAATC TGACCCAGGC CAACCTGTCC CGTGCGGTGG TCGAAGGCAC TACCTTCGGC
CTTCGCTACG GGCTCGACCT GTTACGCGAC AGCGGTATCA AAAGCGAAAA GATCCGTCTG
ATCGGCGGTG GCTCCAAAAG TGCCGTGTGG CGGCAGATCG TGGCCGACAT CATGAACACT
CCGGTGATCT GCACCGACCA CTCGGAAGCC GCCGCGCTGG GCGCCGCCAT TCAAGCGGCC
TGGTGCTGGT CGCGCGCCAA CGGCAAAGCT CAGGACCTGC AGCAACTGTG TGAACGCTGC
GTGAGTCTCG ATCAGAGCAG TGAGACGCAT CCTGTGGTGC ATAATGTGGC CGCCTACCAG
CAGGTCTATC AGGGTTATCA GGCGCAATTG CGCAAGGTTT GA
|
|---|
| Protein sequence | MFLGIDCGTQ GTKVLVLDTE SGTVLGEGSA PHSLISDHNG RREQDVQQWL DALQQATREA
LAASGVSGQQ IQGIGVSGQQ HGLVLLDAQG QVLRPAKLWC DTESAPENQR LLDFLGGAQG
SLQRLGLVIA PGYTVSKLLW TKEQYPDLFE RIDKVLLPHD YLNYWLTGRC CTEFGDASGT
GYFNVRTREW DLPLLAHIDP SGRLGKALPQ LLQAHEPVGA LRAEVARLLG LNPDALVSSG
GGDNMMGAIG TGNIQPGLIT MSLGSSGTVY AYADEAQVSE HESVATFCSS SGGWLPLICT
MNLTNATTAI RELFALDIGG FNQVVAQAPI GAEGVLMLPF LNGERVPALP DATGSIVGLD
STNLTQANLS RAVVEGTTFG LRYGLDLLRD SGIKSEKIRL IGGGSKSAVW RQIVADIMNT
PVICTDHSEA AALGAAIQAA WCWSRANGKA QDLQQLCERC VSLDQSSETH PVVHNVAAYQ
QVYQGYQAQL RKV
|
|---|
| |