| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2387 |
|---|
| Symbol | |
|---|
| ID | 3367902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2766731 |
|---|
| End bp | 2768386 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637652733 |
|---|
| Product | malate:quinone oxidoreductase |
|---|
| Protein accession | YP_235464 |
|---|
| Protein GI | 66045623 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0579] Predicted dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01320] malate:quinone-oxidoreductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0382746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.138947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACA GAATGTTTAA GAAAGTGAAC ACGGCCCTCC TGGGTCTGGC CATTTCCATG
GGTCTGATGC CCGTGCAGGC GGCTGAAACC AAGAAAGTCG ACGTACTGCT CGTCGGCGGC
GGCATCATGA GTGCAACCCT CGCTGTCTGG CTCAACGAGC TGGAGCCGAG CTGGTCGATG
GAAATGGTCG AGCGCCTCGA CGGCGTCGCC GAAGAAAGCT CCAACGGCTG GAACAATGCC
GGTACCGGTC ACTCGGCGCT CGCCGAACTG AACTACACCC CTGAAGACAA GAACGGCAAC
GTCGACATCT CCAAGGCCAT CGAGATCAAC GAAGCGTTCC AGATCTCCCG TCAGTTCTGG
TCCTGGCAGG TCAAGACCGG CGTCCTGAAA GACCCGCGTT CGTTCATCAA CTCCACGCCG
CACATGAGCT TCGTGTGGGG CGACAACAAC ATCCAGTTCC TGCGCAAGCG TTACGCAGCA
TTGCAAGCCA GCCCGCTGTT CAGCGGCATG CAGTACTCCG AAGACCACGA GCAGATCAAG
AAGTGGGTCC CGTTGATGAT GGAAGGTCGT GACCCGGCGC AGAAGCTGGC CGTGACCTGG
AGCCCGATCG GCACCGACGT CAACTTCGGC GAGATCACTC GTCAGTTCGT CGCCAACCTG
AAAGCCAAGC AGAATTTCAA TCTGCAGTTG TCGAGCGAAG TCGAAGACAT CAATCACAAC
GACGACGGCA CCTGGCGCGT CAAGTACAAG AACCTGAAAG ACGGCACCGT TACCGAAACC
GACACCAAGT TCCTGTTCAT CGGTGCCGGC GGTGCAGCGC TGCATCTGCT GCAGGAATCC
GGTATTCCTG AAGCCAAGGA ATACGGCGGC TTCCCGGTCG GCGGTTCGTG GCTTGTCACT
GACAACCAGA CCCTGGCCAT GCAGCACATG GGCAAGGCCT ACGGTATCGC GTCGACTGGC
GCGCCACCCA TGTCGGTTCC GCACCTGGAC ACCCGTGTTC TGGACGGCAA GCGCGTGATC
CTGTTTGGCC CATTCGCGAC CTTCTCGACC AAGTTCCTGA AAAACGGTTC CTACTTCGAC
CTGCTGACCA GCACCACCAC GCATAACGTG TGGCCGATGA CTCGCGTCGG TATCGAACAG
TACCCGCTGA TCGAATACCT CGCCGGTCAG GTGATGATGT CTGACGACGA TCGCTTCGCT
GCTCTGAAAG AGTACTTCCC GAACGCCAAG AAAGAAGACT GGCGCCTGAT GCAAGCCGGT
CAGCGCGTAC AGATCATCAA GCGTGACGAA GAGAAAGGCG GCGTTCTGAA GCTGGGTACC
GAAATCGTTG CTTCCAAGGA CGGCAGCATT GCCGGCCTGC TGGGTGCTTC GCCAGGCGCC
TCGACTGCAG CGCCGATCAT GCTGGGCGTA CTTGAGAAAG TCTTCAAGGA CAAGGTAGCG
ACTCCGGAAT GGCAGGCAAA ACTGCACCAG ATCGTGCCTA GCTACGGCAC CAAGCTGAAC
AACAATCCGG ATCGTGTTGC CGAGGAATGG GCTTACACCG CCGAAGTCCT GCAACTGACT
CCACCGCCGC CGGTGAACAA GACAGGTAAT GCTCCAACAC CTGCACCTGC TGCACAGCCA
GCGAAAAGCA ATCCAGCCAG TGACATGGCG CTCTAA
|
|---|
| Protein sequence | MDDRMFKKVN TALLGLAISM GLMPVQAAET KKVDVLLVGG GIMSATLAVW LNELEPSWSM
EMVERLDGVA EESSNGWNNA GTGHSALAEL NYTPEDKNGN VDISKAIEIN EAFQISRQFW
SWQVKTGVLK DPRSFINSTP HMSFVWGDNN IQFLRKRYAA LQASPLFSGM QYSEDHEQIK
KWVPLMMEGR DPAQKLAVTW SPIGTDVNFG EITRQFVANL KAKQNFNLQL SSEVEDINHN
DDGTWRVKYK NLKDGTVTET DTKFLFIGAG GAALHLLQES GIPEAKEYGG FPVGGSWLVT
DNQTLAMQHM GKAYGIASTG APPMSVPHLD TRVLDGKRVI LFGPFATFST KFLKNGSYFD
LLTSTTTHNV WPMTRVGIEQ YPLIEYLAGQ VMMSDDDRFA ALKEYFPNAK KEDWRLMQAG
QRVQIIKRDE EKGGVLKLGT EIVASKDGSI AGLLGASPGA STAAPIMLGV LEKVFKDKVA
TPEWQAKLHQ IVPSYGTKLN NNPDRVAEEW AYTAEVLQLT PPPPVNKTGN APTPAPAAQP
AKSNPASDMA L
|
|---|
| |