| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2297 |
|---|
| Symbol | |
|---|
| ID | 3367812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2669287 |
|---|
| End bp | 2670087 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637652647 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_235378 |
|---|
| Protein GI | 66045537 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.844738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000370278 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCACATCT CACTCAAGCA ACAAGTTGCA ATCGTTACCG GCGCCAGTTC CGGTCTGGGC
GCAGGTGCCG CACGCGCGCT GGCAGAGGCC GGTGCCGCCG TGGTGATCAA CTACAACTCC
AAGCCTGAAC CTGCCGAGAA ACTCGCCGAA GAGATTCGTG CGGCCGGGGG CAAGGCGCTG
GCTGTGGGTG CCGACGTTTC GAAGGAAGAA GACGTCGAGC GGCTGTTTGC AAAGACCATC
GAACATTTCG GCGCGCTGGA TATTCTGGTC GCCAATTCCG GCTTGCAAAA GGACGCGTCG
ATCGTCGACA TGTCCCTCGA AGACTGGAAT ACCGTCATCA ACGTCAATCT GACCGGGCAG
TTTCTCTGCG CCCGCGCAGC ATTGCGCCAG TTCATCAAGC AGGGCATGCG CCCTGAAGTG
TCACGGGCCA TGGGCAAGAT CATTCACATG AGCTCGGTGC ACCAGCTGAT TCCATGGGCC
GGGCACGTCA ATTACGCAGC GTCCAAGGGC GGCGTCGACC TGTTGATGCG CAGCATCGCT
CAGGAAGTCG GCGAACTGAA GATTCGCGTC AACAGCGTTG CACCGGGTGC CATCCGCACG
CCGATCAATG CCGATGCACG CAAGGGCGAC GCCGAGAAGG AAATGCTCAA GCTGATCCCT
TATGGTCGTA TCGGCGAGCC GGAAGACGTC GCCAATGCCG TGCTCTGGCT GGCTTCCGAT
GCCTCGGATT ATGTGCACGG CACCACCCTG TTCATCGACG GCGGCATGAC CCTCTATCCG
GAGTTCCGTG GCAATGGCTG A
|
|---|
| Protein sequence | MHISLKQQVA IVTGASSGLG AGAARALAEA GAAVVINYNS KPEPAEKLAE EIRAAGGKAL
AVGADVSKEE DVERLFAKTI EHFGALDILV ANSGLQKDAS IVDMSLEDWN TVINVNLTGQ
FLCARAALRQ FIKQGMRPEV SRAMGKIIHM SSVHQLIPWA GHVNYAASKG GVDLLMRSIA
QEVGELKIRV NSVAPGAIRT PINADARKGD AEKEMLKLIP YGRIGEPEDV ANAVLWLASD
ASDYVHGTTL FIDGGMTLYP EFRGNG
|
|---|
| |