| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2289 |
|---|
| Symbol | |
|---|
| ID | 3367804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2659017 |
|---|
| End bp | 2659418 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637652639 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_235370 |
|---|
| Protein GI | 66045529 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.115279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000286842 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTT CCACGCAAGA CACCGATGAA GTGCTGAGCG AGATCAACGT CACGCCGCTG
GTAGACGTGA TGCTGGTGCT GCTGGTGGTG TTCATCGTTA CCGCGCCGCT ATTGACAAAC
TCGATCCCGA TCAACCTGCC CAAGACCGAA TCGGTCGCGC CAGTGGAGCA GAAAGACCCA
TTGGTGGTGA GCATCGACGG GCAGGGCAAG CTGTTCATCA ACAAGGACGA AATCCAGCCG
GACTTGCTGG AAAGCAACCT GAAGGCGGCC AGGGACAAGG CCCCTGACGT GCGCGTGCAA
TTGCAGGCGG ACAATGGCGT CAACTACGGG GAAGTCGCGC GCGCCATGGC CTCCATCGAA
CGTGCCGGGA TTACCAAATT GTCGGTAATC ACTGCCAGGT AA
|
|---|
| Protein sequence | MAFSTQDTDE VLSEINVTPL VDVMLVLLVV FIVTAPLLTN SIPINLPKTE SVAPVEQKDP
LVVSIDGQGK LFINKDEIQP DLLESNLKAA RDKAPDVRVQ LQADNGVNYG EVARAMASIE
RAGITKLSVI TAR
|
|---|
| |