| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2283 |
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| Symbol | |
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| ID | 3367798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2653659 |
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| End bp | 2654819 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637652633 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235364 |
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| Protein GI | 66045523 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00947214 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAGTT TCAGCGATTG GCGTGTCATG CCTGCAGTAG CCCTGCTGGC AGCGTTGGGT
CTGTCCGGGT GCGAGCAGAA ACAGCAGCAG GATCACGCTG CATCAACAGC GCCCAAAGAG
GTGGAAGCCA TTACCGTCAA CACCGAATCG TTCACAGTGG TTGACGAATT GCCCGGCCGT
ATCGAACCCG TGCGTGTGGC GCAGGTTCGT GCCCGGGTGG CCGGTATCGT GCTGAGCCGC
AACTTCGAGG AAGGCGCCGA CGTGAAAGCC GGCGCAGTGC TGTTCCAGAT TGATCCGGCG
CCGTTCAAGG CCGCGCTGTC CAAGGCGCAG GGAGATCTGG CACGGACCCA GGCCACGTTG
TTCGAGACTC AGGCTACGGT CAAGCGCTAT GAGTCGCTGG TGGAAATTGA AGCGGTGAGT
CGTCAGACCT TCGACACGGC CCGCTCCGCG CTGCAAAACG CTGTCGCAGC GAAGCGTTCA
GCCGAGGCCG ATGTGGAAAC AGCCAGGCTG AACCTGGGCT ATGCCACCGT CAAGGCGCCG
ATTTCGGGCC GCATCGGCCG CGCGATGGTC ACCGAGGGCG CGCTGGTCGG TCAGGGCGAA
ACCACCCTGC TGGCCACCAT TCAACAACTC GACCCGGTCT ACGCCGACTT CACCCAGCCG
GCTGCCGAGG CCTTGCAGAT GCGCGCTGCA ATACAGGAAG GCCGCTTGCC CAAGGGTGGC
GAAGACGCGT TGTCGCTGAG TGTCGACGGC ACCGACTACA CGAGCACCGG CACCCTGCTG
TTTACCGATG TTGCAGTAGA CCGGACCACC GGTCAGGTGT CGTTGCGGGC CCGCTTTGCC
AATCCCAAGG GCGTGCTGCT GCCCGGTATG TACGTGCGGG TACGCACACC GCAACGCGTC
GACAGCAACG CCATTCTTGT TCCGCAACGT GCCGTTCAGC GCTCCGGTGA CGGTGCCGCC
CGCGTGCTGG TGATTGCCCA GGACGGCACG GTCGAAGCGC GTCCGGTCAA AACCGGGGCG
ATGCAGGATT CGCGCTGGCA GATCACCGAA GGCCTGAAGG CAGGCGAACA GGTCATTGTC
GGCAACATGA CCGGGCTCAG CGCCGGTGAC AAGGTCGCCC GCAAATCGCC CTCCGCCCAG
CCGCAGGCCA AGGCGCAATA A
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| Protein sequence | MSSFSDWRVM PAVALLAALG LSGCEQKQQQ DHAASTAPKE VEAITVNTES FTVVDELPGR
IEPVRVAQVR ARVAGIVLSR NFEEGADVKA GAVLFQIDPA PFKAALSKAQ GDLARTQATL
FETQATVKRY ESLVEIEAVS RQTFDTARSA LQNAVAAKRS AEADVETARL NLGYATVKAP
ISGRIGRAMV TEGALVGQGE TTLLATIQQL DPVYADFTQP AAEALQMRAA IQEGRLPKGG
EDALSLSVDG TDYTSTGTLL FTDVAVDRTT GQVSLRARFA NPKGVLLPGM YVRVRTPQRV
DSNAILVPQR AVQRSGDGAA RVLVIAQDGT VEARPVKTGA MQDSRWQITE GLKAGEQVIV
GNMTGLSAGD KVARKSPSAQ PQAKAQ
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