| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2229 |
|---|
| Symbol | |
|---|
| ID | 3367744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2590553 |
|---|
| End bp | 2592664 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637652579 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_235310 |
|---|
| Protein GI | 66045469 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.560265 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCTC GTAGAATCGT GTCTCTGGCA GGCTTGGCAA TCGGGGTTTT TGGCAACACG
GGTTACGCGG AGGAAAGCCC GCAGACCATT GAACTGGAAA GCGTCAACGT CACTTCCGAC
TATCAGTACG AGACGGCGAC CAGCCCGGTC CAGGGCTATC GCGCCACCCG CTCGGCCACG
GCCACCAAGA CCGACACCGC CATCGCGGAT ATCCCGCAGT CGATCAGCGT CGTACCTGCC
TCAGTACTCA AGGACCTTGG CAGCAACAAT GTCGAGCGCG CGCTGGATTT TGCCGGCGGC
GTATCCAAGC AGAATAACTT CGGCGGTCTG ACGCTTTACG AGTACAGCAT CCGCGGCTTC
ACCACGTCCG AGTTCTACAA GGACGGCTTC AGCGCCAACC GCGGTTACCC AGCCACGCCG
GATGCCGCAA ATATCGAACG TATCGAAGTG CTCAAAGGCC CCGCCGCCAG CCTGTACGGG
CGTGGCGATC CGGGCGGCAC GGTCAACATC GTCAGCAAAA AACCCCAGCG TGAAGCCTTT
ACCACCTTGC AGACCAGCGC AGGCAGTTGG GATCGCTATC GCACCGCGCT GGACGTCAAC
ACGCCGCTGG ATGAAGAAGG CAATCTGCTT TCGCGGGTCA ATCTGGCCGT CGAAGACAAC
AACAGCTTTC GTGACCATGT AGAGAGCAAA CGGGTGTTTG TCGCCCCATC CTTCAGCTGG
CAATTGAACC CTGACACCCG TCTGCTGCTG GAAACCGAGT TCGTGCGCCA CACATCGACG
TTCGACCGAG GCGTGGTCGC CCCCAACAAC AAGTGGAGTG GCGTGTCGCG CTCGACCTTC
CTCGGTGAGC CGGACGATGA CATCGATAAT GACAACAATA TGGTGCAGTT CGCCCTGGAC
CACCAGCTCA ACGATGTGTG GTCGCTGCGT CTGGCCAGCC ATTACAAACA GGGCGAGATG
TCGGGTTTTG CCAGCGAGGC GCGCCCGCTG AATGCCGACG GGCACACGGT CAATCGCCGT
TACCGTGAGC GCGACAACAA CTGGCATGAC AGCATCACCC AGTTGGAGTT GCGCGGCCGT
TTCGACGGCC TGGGCGTCGA GCACGAGGTG CTGATCGGCA CCGAGTACGA GAACTATCGC
AAGAACGAAC GCGTCACGAC CATCGCCGGC AGCCCCTACG CCATCGACAT CTACAACCCG
GTCTACGGCC AGCCGAAACC CGCTGGCGCA CGCTCCGGTA CTGATTTTTA CGAGCATGTC
GAAAGCCGCG CGCTGAACCT GCAGGACCAG ATTGTCTTTA CCGACAAGCT GCGCGGCATG
ATCGGGGCAC GCTACGAGCA CTTCGATCAG CAGGTCGATG ACTTCACCAC CAACGCCACT
TCCGGGCAGC GCCAGGACGC TTTCACTCAA CGCGCCGGGT TGCTTTATCA ACTCACACCG
CAGGTCGGCC TGTTCGCCAA TGCCTCCACC TCGTTCAAGC CCAACAATGG CCTGGACGCC
GCCGGCAAAA CCTTCGACCC GGAAGAAGGC GTCGGCTACG AAGTCGGAAT CAAAAGCGAA
CTGTTCGACC ATCGCCTGAG CACGACCCTC GCCGCCTTTC ATATCGAAAA GGAAAACGTT
CTGGCCCTGG ACCCCGGCAC CGACACCAAT CGCGCGGTGG GCAAGGCTCG CAGCCAGGGC
TTCGACGTGC AATTTACCGG GCAGGTCAGC GAAGCCGTTC GGGTCATCGG TGCCTTCGCC
TACATCGACG CCGAAGTGAC CAAGGGCGAC CAGAGCATCC CCACGGGCAG TCGCATCCTC
GGTGTCGCCA AACACAGCGG CAGCCTGCTG GGCGTCTATG AGTTCCAGGA AGGCGCGTTG
CGCGGCTCGG ACGTGGGCGC GGCGTACACC TACGTCGGCG ACCGCTCGGG GCAGTCGGGC
GCTGACTTCG AGTTGCCGGC CTACCAGACC GTAGACCTGC TGGCGCATTA CAAAGCCAGC
GACAACGTCA CGGTGGGTTT GAACCTGAAC AACATTTTCG ATGAAAAATA CTACGAGCGC
TCCTACAGCA ACTACTGGGT CGCGCCTGGC GAACCGCGCA ACGTTACGGT CAGCCTGACC
CTCAGCCTCT GA
|
|---|
| Protein sequence | MSSRRIVSLA GLAIGVFGNT GYAEESPQTI ELESVNVTSD YQYETATSPV QGYRATRSAT
ATKTDTAIAD IPQSISVVPA SVLKDLGSNN VERALDFAGG VSKQNNFGGL TLYEYSIRGF
TTSEFYKDGF SANRGYPATP DAANIERIEV LKGPAASLYG RGDPGGTVNI VSKKPQREAF
TTLQTSAGSW DRYRTALDVN TPLDEEGNLL SRVNLAVEDN NSFRDHVESK RVFVAPSFSW
QLNPDTRLLL ETEFVRHTST FDRGVVAPNN KWSGVSRSTF LGEPDDDIDN DNNMVQFALD
HQLNDVWSLR LASHYKQGEM SGFASEARPL NADGHTVNRR YRERDNNWHD SITQLELRGR
FDGLGVEHEV LIGTEYENYR KNERVTTIAG SPYAIDIYNP VYGQPKPAGA RSGTDFYEHV
ESRALNLQDQ IVFTDKLRGM IGARYEHFDQ QVDDFTTNAT SGQRQDAFTQ RAGLLYQLTP
QVGLFANAST SFKPNNGLDA AGKTFDPEEG VGYEVGIKSE LFDHRLSTTL AAFHIEKENV
LALDPGTDTN RAVGKARSQG FDVQFTGQVS EAVRVIGAFA YIDAEVTKGD QSIPTGSRIL
GVAKHSGSLL GVYEFQEGAL RGSDVGAAYT YVGDRSGQSG ADFELPAYQT VDLLAHYKAS
DNVTVGLNLN NIFDEKYYER SYSNYWVAPG EPRNVTVSLT LSL
|
|---|
| |