| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2193 |
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| Symbol | |
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| ID | 3367708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2548506 |
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| End bp | 2549609 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637652543 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235274 |
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| Protein GI | 66045433 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00691004 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCTGT CCAGACCCAA CACCACCGTC TTGTTGTTAT TGCCTCTGTT CCTGGCTGCG
TGCAGCGAGT CATCCGGCGT GCGCGATCCA CGTACCCAGC CGCCTCTGGT GAGGGCGGCC
ACTGTTGCAA GTGCTGATCA AGCTTCCCGT TCGTTCACCG GGGTTGTGGT CGCTCGGGTT
CAGAGCGAAC TGGGGTTTCG GGTTTCCGGG AAGGTGCTCG AGCGCCTGGT TGATACCGGC
CAGACCGTCA AGCGCGGTGA GCCGCTGATG CGCCTGGATC CCGTTGACCT TGGTCTTCAG
GCTCAGGCCC AACAGCAGGC GGTTGCCGCT GCTGTGGCGC GCGCCAGGCA GACCGCCGAT
GACGAAGCGC GCAACCGTGA CCTGGTCGTC GCTGGTGCGA TATCCGCTTC CGCTTACGAC
AGGATCAAAT CCCTGGCCGA CACCGCCAAG GCAGAACTGA ATGCTGCACA AGCGCAGGCC
AGCGTGGCAC GTAACGCAAG CGGGTACGCC GTCTTACTGG CGGACGCCGA CGGCGTGGTG
GTCGACACTT TGGTCGAGCC TGGGCAGGTC GTCAGCGCAG GCCAGCCCGT GGTCAGGCTG
GCAAAGGCCG GGCCACGCGA AGCCATTGTC CATCTGCCTG AAACCTTGCG GCCGGCGATG
GGTGATCGGG CTGAGGCCAG ACTGTATGGC GACAGTGCGC GCGTCATACC GGCAAGGTTG
CGGCTGCTCT CTGACGCCGC AGACCCGCTG ACGCGTACGT TTGAAGCCAG GTATGTGCTT
GAAGGCTCAA ACGTCAGTGC GCCTCTGGGG TCAACGGTGT CCCTCGATAT CGCCGCTGGC
AAGCCTGCCC GGCAGTCGCT GGCGATACCC ATTGCCGCTC TGCATGACCC CGGTCGAGGC
CCAGGTGTCT GGGTCATTGC AGGTACGCCT GCACAAGTCA CCTGGCGCGC CGTACAGCTG
CTGGGTGTGA GTGACGATTC GGCAAACGTG AGTGGTGGTC TCGAGGCCGG TGAGCAGGTC
GTGGCATTGG GCACGCATTT ACTTCACGAC GGTGAGCAAG TGCGCGTGCA GCAGGGTGGT
ATCACCGCTG AGGCGCAACC ATGA
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| Protein sequence | MLLSRPNTTV LLLLPLFLAA CSESSGVRDP RTQPPLVRAA TVASADQASR SFTGVVVARV
QSELGFRVSG KVLERLVDTG QTVKRGEPLM RLDPVDLGLQ AQAQQQAVAA AVARARQTAD
DEARNRDLVV AGAISASAYD RIKSLADTAK AELNAAQAQA SVARNASGYA VLLADADGVV
VDTLVEPGQV VSAGQPVVRL AKAGPREAIV HLPETLRPAM GDRAEARLYG DSARVIPARL
RLLSDAADPL TRTFEARYVL EGSNVSAPLG STVSLDIAAG KPARQSLAIP IAALHDPGRG
PGVWVIAGTP AQVTWRAVQL LGVSDDSANV SGGLEAGEQV VALGTHLLHD GEQVRVQQGG
ITAEAQP
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