Gene Psyr_2153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2153 
Symbol 
ID3367667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2509226 
End bp2510218 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content62% 
IMG OID637652502 
Productinner-membrane translocator 
Protein accessionYP_235234 
Protein GI66045393 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.654738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.63081 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATA CTCCTTCTCC GACGCTGACT GTGCCAGTCC GTCGCGGCGG CAACTACTTT 
GGCCTGGGTA CCTACATCGG GCTGGCCGGT GCGTTGCTGG TGATGATCGT GCTGTTCTCG
CTGCTCAGCG ATCACTTCCT GTCCTACCAG ACCTTCAGCA TGCTCGCCAA CCAGATCCCG
GACCTGATGG TGCTGTCGGT CGGCATGACG CTGATCCTCA TCATCGGCGG CATCGACCTG
TCGGTCGGCT CGGTGCTGGC GCTGGCTGCT TCGGCGGTCA GTGTGGCAAT CCTCGGCTGG
GGCTGGAGCG TGTTTCCGGC GGCGTTGCTG GGCATTGCCT GTGCGACGCT GGCGGGTACG
ATCACCGGCT CGATTACGGT TGCCTGGCGC ATCCCTTCGT TCATCGTGTC TCTGGGCGTG
CTGGAAATGG CTCGTGGTGC GGCCTATCAG ATGACCAATT CGCGTACCGC CTACATCGGT
GATTCGTTCG CCTGGCTGTC CGATCCGATT GCCTTTGGCA TTGCGCCGTC TTTCATCATC
GCGTTGCTGA TCATCTTCGT CGCTCAGGCG GTACTGACCC GGACCGTTTT CGGTCGCTAC
CTGATCGGCA TCGGCACCAA TGAAGAGGCC GTGCGTCTGG CGGGTATCAA TCCCAAGCCT
TACAAGATTC TGGTGTTCTC GCTGATGGGG CTGCTGGCCG GTGTCGCGGC ACTGTTTCAG
ATATCCAGGC TGGAAGCGGC CGATCCGAAT GCCGGTGCCG GGCTTGAGCT GCAGGTCATT
GCGGCAGTGG TGATTGGCGG TACCAGCCTG ATGGGCGGAC GCGGTTCGAT CATCAGCACC
TTTTTCGGTG TGCTGATCAT TTCCGTGCTG GCCGCGGGCC TGGCGCAGAT CGGTGCGACC
GAGCCGACCA AGCGGATCAT CACCGGTGCG GTGATCGTGA TTGCTGTGGT GCTGGACACC
TACCGCAGCC ACCGGGCTCG GCGCCAGGGC TGA
 
Protein sequence
MKNTPSPTLT VPVRRGGNYF GLGTYIGLAG ALLVMIVLFS LLSDHFLSYQ TFSMLANQIP 
DLMVLSVGMT LILIIGGIDL SVGSVLALAA SAVSVAILGW GWSVFPAALL GIACATLAGT
ITGSITVAWR IPSFIVSLGV LEMARGAAYQ MTNSRTAYIG DSFAWLSDPI AFGIAPSFII
ALLIIFVAQA VLTRTVFGRY LIGIGTNEEA VRLAGINPKP YKILVFSLMG LLAGVAALFQ
ISRLEAADPN AGAGLELQVI AAVVIGGTSL MGGRGSIIST FFGVLIISVL AAGLAQIGAT
EPTKRIITGA VIVIAVVLDT YRSHRARRQG