Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2085 |
Symbol | prpB |
ID | 3367599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2430393 |
End bp | 2431286 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637652434 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_235166 |
Protein GI | 66045325 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.36601 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00432704 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTCATG ACAACAGCAC TCCCGGCCAG CGTTTCCGCG ATGCAGTTAC CAGCGAGCAG CCGCTGCAAG TGGTCGGCGC GATCAATGCC AACCACGCAC TGCTCGCCAG GCGTGCCGGG TTCAAGGCTA TTTATCTGTC GGGTGGCGGA GTCGCTGCAG GATCTCTGGG CATTCCGGAC CTGGGAATCA CTGGGCTTGA AGACGTACTG ATCGATGTGC GGCGCATCAC CGACGTCTGC GATCTGCCGT TGCTGGTGGA CGTCGACACC GGTTTCGGCT CTTCGGCTTT CAATGTGGCG CGTACCGTGC GCTCGATGAT CAAGGCCGGG GCGGCGGCGA TTCACATCGA GGATCAGGTG GGCGCCAAGC GTTGCGGGCA CCGTCCCAAC AAGGAAATCG TTTCTCAGCA GGAAATGGTC GACCGGATCA AGGCTGCCGT GGATGCCCGG ACTGACGACA GCTTCGTGAT CATGGCGCGT ACCGATGCGC TGGCGGTTGA AGGGCTGGAG TCGGCGCTGG AGCGTGCCGC TGCCTGTATT GAAGCCGGTG CGGATATGGT GTTTCCAGAG GCCATCACCG AACTGGCGAT GTACAAGCAA TTCGCCAACC GCGCAGGCGT GCCGATCCTC GCCAACATTA CCGAGTTCGG CGCCACGCCG TTGTTTACGG TCGATGAGCT GCGCGAGGCG GACGTCTCGC TGGTGCTGTA TCCGCTTTCC GCATTCCGCG CGATGAACAA GGCTGCAGAA AATGTCTACG GCGCAATCCG CCGTGACGGC AGCCAGAAAA ACGTGATTGA CAGCATGCAG ACGCGCATGG AGCTGTATGA CGCGATCGAT TACCACACAT TCGAACAGAA GCTGGATGCG CTGTTTGCGC AGAAGAAGGG GTGA
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Protein sequence | MSHDNSTPGQ RFRDAVTSEQ PLQVVGAINA NHALLARRAG FKAIYLSGGG VAAGSLGIPD LGITGLEDVL IDVRRITDVC DLPLLVDVDT GFGSSAFNVA RTVRSMIKAG AAAIHIEDQV GAKRCGHRPN KEIVSQQEMV DRIKAAVDAR TDDSFVIMAR TDALAVEGLE SALERAAACI EAGADMVFPE AITELAMYKQ FANRAGVPIL ANITEFGATP LFTVDELREA DVSLVLYPLS AFRAMNKAAE NVYGAIRRDG SQKNVIDSMQ TRMELYDAID YHTFEQKLDA LFAQKKG
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