Gene Psyr_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2020 
Symbol 
ID3367534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2345072 
End bp2345587 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content59% 
IMG OID637652369 
Product3-hydroxydecanoyl-(acyl carrier protein) dehydratase 
Protein accessionYP_235101 
Protein GI66045260 
COG category[I] Lipid transport and metabolism 
COG ID[COG0764] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 
TIGRFAM ID[TIGR01749] beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.255579 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAC AACACGCCTT TACCCGGGAA GACCTGCTGC GCTGCAGTCG TGGCGAGCTG 
TTCGGCCCAG GTAATGCGCA ACTGCCCGCC CCCAACATGC TGATGGTTGA TCGCATCACG
CACATCAGCG ACGAGGGCGG CAAGTTCGGC AAGGGTGAGT TGGTCGCCGA ACTGGATATC
AATCCGGACC TGTGGTTCTT TGCCTGCCAC TTCGAAGGTG ATCCGGTCAT GCCCGGATGC
CTGGGCCTCG ACGCCATGTG GCAGCTGGTT GGCTTCTATC TTGGCTGGCA GGGCAACCCC
GGCCGTGGCC GCGCCCTGGG TTCAGGCGAA GTGAAGTTTT TCGGTCAGGT TCTGCCTACC
GCCAAAAAAG TCACTTACAA CATCCATATC AAGCGCGTCC TGAAGGGCAA GCTGAACCTG
GCCATCGCCG ACGGTTCGGT GAGTGTCGAC GGTCGCGAAA TCTATACCGC CGAAGGCCTC
CGGGTCGGCG TGTTCACTTC CACTGAAAAT TTCTAA
 
Protein sequence
MTKQHAFTRE DLLRCSRGEL FGPGNAQLPA PNMLMVDRIT HISDEGGKFG KGELVAELDI 
NPDLWFFACH FEGDPVMPGC LGLDAMWQLV GFYLGWQGNP GRGRALGSGE VKFFGQVLPT
AKKVTYNIHI KRVLKGKLNL AIADGSVSVD GREIYTAEGL RVGVFTSTEN F