| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2009 |
|---|
| Symbol | sucA |
|---|
| ID | 3367523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2329661 |
|---|
| End bp | 2332492 |
|---|
| Gene Length | 2832 bp |
|---|
| Protein Length | 943 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637652358 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_235090 |
|---|
| Protein GI | 66045249 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.49055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAA GCGTGATGCA GCGCATGTGG AACAGTGCCC ACCTATCCGG TGGTAACGCT
GCCTATGTGG AAGAGCTCTA TGAGCTTTAC CTGCACGACC CTAACGCTGT GCCAGAAGAA
TGGCGCACCT ACTTTCAGAA GTTGCCAGCT GATGGCAGCT CTGCCACTGA TGTATCGCAC
TCGACCATTC GCGATCATTT CGTGTTGCTG GCCAAAAACC AGCGCCGCGC TCAACCGGTA
TCCGCCGGCA GTGTGAGCAG CGAACACGAG AAGAAGCAGG TTGAAGTGCT GCGACTGATC
CAGGCATATC GGATGCGTGG CCACCAGGCT GCCCAACTCG ATCCGCTGGG CCTGTGGCAG
CGCCCTGCGC CTGCGGATCT GTCGATCAAT CATTACGGCT TGACCAATGC CGATCTTGAT
ACGACCTTCC GTGCCGGCGA CCTGTTCATC GGCAAAGAGG AAGCGAGCCT ACGCGAAATT
CATGAAGCGT TGCAGCAGAC ATATTGTCGC ACCATTGGCT CCGAGTTCAC TCACATCGTG
GATTCCGAGC AGCGCAACTG GTTCATGCAG CGTCTCGAGA GTGTTCGTGG CCGTCCGGTG
TTCTCGGCTG ACATTCAGAG CCACCTGCTC GAGCGTGTTA CCGCAGCCGA AGGCCTCGAA
AAATACCTGG GCACCAAATA CCCGGGCACC AAGCGTTTCG GTCTGGAAGG CGGCGAAAGC
CTGATTCCGA TGCTCGACGA GCTGATTCAG CGTTCCGGGT CCTATGGCAC CAAGGAAGTC
GTGATCGGCA TGGCCCACCG TGGCCGCCTC AACGTACTGG TGAACACCTT CGGCAAGAAT
CCTCGCGACC TGTTCGACGA GTTCGAAGGC AAGAAGAAAG TGGAGCTGGG TTCCGGTGAC
GTCAAATACC ACCAGGGCTT CTCTTCCAAC GTCATGACCG CAGGCGGTGA GGTTCACCTC
GCCATGGCCT TCAACCCGTC TCACCTGGAG ATCGTGTCTC CGGTGGTCGA AGGGTCGGTG
CGTGCACGTC AGGATCGTCG CAACGATCCG AACGGTGACA AGGTTCTGCC GATTTCCCTC
CACGGCGACG CGGCCTTTGC CGGCCAGGGC GTGGTCATGG AAACCTTCCA GATGTCGCAG
ACTCGCGGCT TCAAGACGGG CGGCACGATC CACATCGTCA TCAACAACCA GGTGGGCTTC
ACCATCAGCA ACCCGCTGGA CTCGCGTTCC ACCGAGTACG CCACCGACGT TGCCAAGATG
ATCCAGGCGC CGATCCTCCA CGTGAATGGG GATGATCCGG AAGCCGTGAT GTTCGTGACC
CAGCTGGCCA TCGATTACCG CATGCAGTTC AAGCGCGACA TCGTGATCGA TCTGGTCTGC
TACCGTCGCC GTGGTCACAA CGAAGCTGAC GAGCCGAGCG GTACCCAGCC TCTGATGTAC
CAGCAGATCA CCAAGCAGCG CACCACGCGC GAGTTGTATG CCGAGCATCT GATCAAGACC
GGCGTTCTTG ACGATGCCCG CGTTCAGGCC AAGGTCGACG ACTACCGCAG CGCGCTGGAC
AACGGTCTGC ACGTGGTGAA AAGCCTGGTC AAGGAGCCGA ACAAGGAATT GTTCGTCGAC
TGGCGTCCAT ACCTGGGCCA TGCCTGGACT GCGCGTCACG ACACCCGCTT CGATCTCAAG
ACCCTGCAGG AACTGTCCGC CAAGCTCATG GAGCTGCCGG AAGGCTTCGT CGTGCAGCGT
CAGGTTCAGA AGATCTATGA AGACCGCCAG AAGATGCAGG CCGGTGGCTT GCCGATCAAC
TGGGGCTACG CCGAAACCAT GGCGTACGCC ACACTGGCCT TCGAAGGTCA TCCGATCCGC
ATGACGGGGC AGGACATCGG TCGCGGTACG TTCTCGCACC GTCACGCCGT GCTGCACAAC
CAGAAAGACG CCGGGACCTA TATCCCGCTG CAGAATCTGT ACTCCGGTCA GCCACGTTTC
GACCTGTACG ACTCGTTCCT TTCGGAAGAG GCCGTACTGG CATTCGAATA CGGTTATTCG
ACCACCCAGC CTGATGCACT GGTTATCTGG GAAGCCCAGT TCGGCGACTT CGCCAACGGT
GCCCAGGTGG TTGTCGACCA GTTCATCACC AGCGGCGAGC ACAAGTGGGG CCGTCTGTGC
GGTCTGACCA TGCTGTTGCC TCATGGCTAT GAAGGGCAGG GGCCAGAGCA CTCGTCGGCC
CGTCTCGAGC GTTACCTGCA ATTGTGCGCC GAGCACAACA TTCAGGTGTG CGTACCGACG
ACTCCGGCGC AGATCTATCA CTTGTTGCGT CGTCAGGTCA TCCGTCCGCT GCGCAAGCCG
CTGATCGTGC TGACACCGAA GTCGCTGCTG CGTCACAAGC TGGCTGTTTC GACCCTGGAA
GATCTGGCCG AAGGCTCGTT CCAGACCGTC ATTCCGGAAA TCGATACCCT CGATCCGGCC
AAGGTCACGC GTCTGGTGCT GTGCAGCGGC AAGGTTTACT ACGACCTGCT GGAAAAACGC
CGTGCCGAAG GGCGTGAAGA CATCGCCATC GTTCGCCTCG AGCAGCTGTA TCCGTTCCCT
GAAGATGATT TGATGGAAAC CATCGCGCCT TACACCAACC TGCAGCATGT GGTCTGGTGT
CAGGAAGAAC CGATGAACCA GGGTGCCTGG TACAGCAGTC AACACCACCT GCGTCGCAGC
ATGGGCAACC ACAAACGTGA ACTCGTTCTC GAGTACGCCG GTCGTGATGC TTCTGCCGCT
CCGGCGTGTG GTTACGCTTC GATGCACGCC GAGCAGCAGG AAAAACTGCT GCAAGATGCC
TTCACTGTTT AA
|
|---|
| Protein sequence | MQESVMQRMW NSAHLSGGNA AYVEELYELY LHDPNAVPEE WRTYFQKLPA DGSSATDVSH
STIRDHFVLL AKNQRRAQPV SAGSVSSEHE KKQVEVLRLI QAYRMRGHQA AQLDPLGLWQ
RPAPADLSIN HYGLTNADLD TTFRAGDLFI GKEEASLREI HEALQQTYCR TIGSEFTHIV
DSEQRNWFMQ RLESVRGRPV FSADIQSHLL ERVTAAEGLE KYLGTKYPGT KRFGLEGGES
LIPMLDELIQ RSGSYGTKEV VIGMAHRGRL NVLVNTFGKN PRDLFDEFEG KKKVELGSGD
VKYHQGFSSN VMTAGGEVHL AMAFNPSHLE IVSPVVEGSV RARQDRRNDP NGDKVLPISL
HGDAAFAGQG VVMETFQMSQ TRGFKTGGTI HIVINNQVGF TISNPLDSRS TEYATDVAKM
IQAPILHVNG DDPEAVMFVT QLAIDYRMQF KRDIVIDLVC YRRRGHNEAD EPSGTQPLMY
QQITKQRTTR ELYAEHLIKT GVLDDARVQA KVDDYRSALD NGLHVVKSLV KEPNKELFVD
WRPYLGHAWT ARHDTRFDLK TLQELSAKLM ELPEGFVVQR QVQKIYEDRQ KMQAGGLPIN
WGYAETMAYA TLAFEGHPIR MTGQDIGRGT FSHRHAVLHN QKDAGTYIPL QNLYSGQPRF
DLYDSFLSEE AVLAFEYGYS TTQPDALVIW EAQFGDFANG AQVVVDQFIT SGEHKWGRLC
GLTMLLPHGY EGQGPEHSSA RLERYLQLCA EHNIQVCVPT TPAQIYHLLR RQVIRPLRKP
LIVLTPKSLL RHKLAVSTLE DLAEGSFQTV IPEIDTLDPA KVTRLVLCSG KVYYDLLEKR
RAEGREDIAI VRLEQLYPFP EDDLMETIAP YTNLQHVVWC QEEPMNQGAW YSSQHHLRRS
MGNHKRELVL EYAGRDASAA PACGYASMHA EQQEKLLQDA FTV
|
|---|
| |