| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1993 |
|---|
| Symbol | |
|---|
| ID | 3367507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2314031 |
|---|
| End bp | 2314924 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637652342 |
|---|
| Product | helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal |
|---|
| Protein accession | YP_235074 |
|---|
| Protein GI | 66045233 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.613868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0985954 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAC CTGTTATGCC GGATGGCAAT GCCACCCTTG TTTCCCTGAT CCAGCCGCTG
GCGGTGCGCC CGGGGTTTGT CGCTACGCCG TTGCCGGAGG TCCGCGTGCT TTCGGCGTTT
GGTTATGTCG CCAGCAGCCC GCAGATCTAC GAGCCGAGCC TGATGATCGT GGTGCAGGGC
AGCAAGGTCG CGTGCCTGGG GCCGCGTACG TTCGAATACG GCACCGGGCA TTACCTGATT
CAGGCGCTCT CTGTGCCGTT CAAGTGCGAA ACCTTTGCCA CTCCGGAAAA GCCGCTTTAC
GGTGTTTCAG TGGCCATCGA CCGGGTATTG CTCGGTGAGC TGGTGCAGGC GATGGGCCCG
GTCACTGGAC ACGAGAGTCA GGTGCAGACA CCGGAATCCA TGACCTCGGT GCGCATCGAC
AACACCATGC GCGACAGTGT CGAGCGTCTG CTGCGGTGCC TGCATGATCC GCTGGAGTGC
CAGGCCATGG GCCAGGCACG GATTCGCGAG GTGCTGTACA CCGCGCTGCG TGGACCGCAG
TCCGGGGTGT TGCGTGCACT GGTCGAACAG CAGGGGCAGT TTGCGCGAAT TGCCTCGGCC
GTGACCTATC TGCATGAGCA TTATGACCAC GCGCTGAACG TCGACACGCT GGCCAGTTGC
GCGAACATGA GCACGTCGAC CTTTCATGAA CATTTCAAGC GCAGCACGCT GTTGTCGCCG
GTGCAGTACC TCAAGCGCCT GCGCCTGCTC AAGGCTCAGC AATTGCTGGT GGCCGAGGGC
CTGGGTGTGG CGCAGGTCGC GCTGAAGGTC GGCTATCAAA GTGCGTCGCA GTTCAGTCGT
GAATACAAAC GTTACTTTGA GCGCAGACCG GGCGAAGAGG GATGTAGGGG GTAG
|
|---|
| Protein sequence | MTLPVMPDGN ATLVSLIQPL AVRPGFVATP LPEVRVLSAF GYVASSPQIY EPSLMIVVQG
SKVACLGPRT FEYGTGHYLI QALSVPFKCE TFATPEKPLY GVSVAIDRVL LGELVQAMGP
VTGHESQVQT PESMTSVRID NTMRDSVERL LRCLHDPLEC QAMGQARIRE VLYTALRGPQ
SGVLRALVEQ QGQFARIASA VTYLHEHYDH ALNVDTLASC ANMSTSTFHE HFKRSTLLSP
VQYLKRLRLL KAQQLLVAEG LGVAQVALKV GYQSASQFSR EYKRYFERRP GEEGCRG
|
|---|
| |