| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1981 |
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| Symbol | |
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| ID | 3367495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2299450 |
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| End bp | 2301642 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637652330 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_235062 |
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| Protein GI | 66045221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0548345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAACC CACCGGATAA CGCCGCGCCG AAAACCACCG TACAGACGGC CTCTGCCAGG
CTGTCGCTGA AAGACGCAGA GCGGGCCCTG CAGGAAACCC GTGATCGCCT GGAGCTGGCA
CTGGACCTGG CGCAAATGGG CACCTGGGAT CTGGATATCG TCCGCAACCG GCTGCAGGCT
TCGGCACGCG CGGCGCTGTT GCACGGCATG CCGGCACGGA CCTTCGATGA GTCTGGCGGG
CAGTTCTTCG GCAGCCTGCC CGCCGAAGAA CGCCGTCGCA TGCGTGCAAT CTACGCTGCG
GCACTCGAAA CCGGGCAGGA CTGCCTGCAA GTCACCTACC GGTTTCAATT GAAGAACGGC
ACGTCACGCC TGCTTGAAGG CCGCGCGCGG ATTTATCGGG ATGAACAGGG CCAGCCCGTC
AGGCTGTCCG GCACCCTGAT GGACATTACC CAACAGTGCG CTCAGGTCGC CCTGGAGGCC
AGCGAGGAAA AATTTGCCAA GGCGTTTCAT TCAAGCCCCG ACTCGATCAC CATCACCGAA
ATCGACTCGG GCCGCTACGT CGAGGTCAAC GATGGCTTCA GCCGCCTGAC CGGTTTCAGC
GCCCACGAAG TGCTTGGCCG TACAGCGCAT GAAGTCGGCA TCTGGACCGA CACCTTGCAG
CGCGAACACA TGCTTGAAGA ACTGCGCCAG AAAGGCCGCG TGCATCACCG CGAAATGGAC
GGTCGGGACA AGCATGGCGC GCCGCTGGTG CTGGATATAT CGGTCGAGTT CATCACCCTG
AACAACACCG CTTGCCTTCT GATGAACGCC CGCGACATCG GCGCGCTTAA AAATGCCCAG
GCGCAGATTC AGCACCTGGC TTATCACGAT CCGCTGACCG GGCTGCCCAA TCGCGCACTG
CTGCTCGACC GCCTGAGCCA GCAGGTGTCG CTGCTTCAGC ACCAGAACCT GCGCGGCGCC
CTGCTGTTTC TCGATCTGGA CCATTTCAAG CACATCAATG ACTCGCTCGG CCATCCGGTG
GGCGACAGCG TTCTGAGCAT CATCGCCGCG CGCCTGGAAG CCAGCGTGCG CCAGGAAGAC
ACCGTGGCGC GCTTGGGCGG CGACGAATTC GTGGTATTGA TCTGCGGCCT GGAAGGCTCG
CAGGACGAGG TCACCCGACA AGTGCGGGAG CTGGCCGACA ACCTGCGCAA CCTGCTGGCC
GAGCCGATGT TTCTCGACGG CCATCGCCTG CAGGTCACCC CGAGCATCGG CGTGGTGCTG
ATTCCGGATG ATGGTCTGAC CCCGGCCGAT CTACTCAAGC GCGCCGATAT TGCCCTGTAT
CGGGCCAAGG ATTGCGGGCG CAACGCTTCA CAGTTTTTCC ATGTGTCCAT GCAACAGGCC
GTCAGCCAGC GTCTGCGCCT GGAAAATGAC TTGCGCCTGG CCCTGACCCG CAACGAATTT
CACCTGCACT TCCAGGCCCA GGTCGACTGT CGCAACGAAT ACATCACCGG GGCCGAGGCC
CTGCTGCGCT GGCAACACCC CGAATACGGC TTGCTGGCGC CCGATCAGTT CGTGCAGATA
CTTGAAGAAA GCGGCATGAT TCTGGAGGTC GGCAGCCATA TTCTGAACGA AGCCTGCAAA
ACCGGTGGCC TGCTGTTAAG GCAGGGGCTG ATCCCGGAGA ACAGATTCCT GATGGGTGTC
AATATCAGCC CGCGACAGTT TCTCCAGCAC GATTTCATCG AGCGCGTGGA ACGCAGCCTG
ACCCTGCACC AGTTGCCGGC GTCCATGCTC AAGCTGGAAA TCACCGAAGG TATCGTCATC
CAGAACCTGG ACGACACCAT TCTCAAGATG CTCAGCCTCA AGGCGCTGGG CGTCAGCTTT
GCGATGGATG ATTTCGGCAC CGGCTATTCG TCCCTGACCT ATCTCAAGCG CTTGCCGGTG
GATACGCTGA AGATCGACCA GTCCTTCGTC CAGGACGCCA CCAACGACCC CAACGACGCA
GAAATCATCC GCGCCATCGT CGCCATGGCG CAGAGCCTCA ACCTGAACGT GATCGCGGAA
GGCGTGGAAA CCTCGGAGCA GTTGGCATTT CTGGAAAAAG TCGGCTGCTA CACCTATCAA
GGCTATCTGT TCAGCGAACC GCTGCCAGGC CCGCAGTTCG AGTCCTTGCT GGAGCTCAAA
CGGCCTGCGC AGCAACCTGC ACATCAGGAC TGA
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| Protein sequence | MPNPPDNAAP KTTVQTASAR LSLKDAERAL QETRDRLELA LDLAQMGTWD LDIVRNRLQA
SARAALLHGM PARTFDESGG QFFGSLPAEE RRRMRAIYAA ALETGQDCLQ VTYRFQLKNG
TSRLLEGRAR IYRDEQGQPV RLSGTLMDIT QQCAQVALEA SEEKFAKAFH SSPDSITITE
IDSGRYVEVN DGFSRLTGFS AHEVLGRTAH EVGIWTDTLQ REHMLEELRQ KGRVHHREMD
GRDKHGAPLV LDISVEFITL NNTACLLMNA RDIGALKNAQ AQIQHLAYHD PLTGLPNRAL
LLDRLSQQVS LLQHQNLRGA LLFLDLDHFK HINDSLGHPV GDSVLSIIAA RLEASVRQED
TVARLGGDEF VVLICGLEGS QDEVTRQVRE LADNLRNLLA EPMFLDGHRL QVTPSIGVVL
IPDDGLTPAD LLKRADIALY RAKDCGRNAS QFFHVSMQQA VSQRLRLEND LRLALTRNEF
HLHFQAQVDC RNEYITGAEA LLRWQHPEYG LLAPDQFVQI LEESGMILEV GSHILNEACK
TGGLLLRQGL IPENRFLMGV NISPRQFLQH DFIERVERSL TLHQLPASML KLEITEGIVI
QNLDDTILKM LSLKALGVSF AMDDFGTGYS SLTYLKRLPV DTLKIDQSFV QDATNDPNDA
EIIRAIVAMA QSLNLNVIAE GVETSEQLAF LEKVGCYTYQ GYLFSEPLPG PQFESLLELK
RPAQQPAHQD
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