Gene Psyr_1979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1979 
Symbol 
ID3367493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2297844 
End bp2298809 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content63% 
IMG OID637652328 
Productdihydrouridine synthase, DuS 
Protein accessionYP_235060 
Protein GI66045219 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.160423 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATTG CTCTGGCGCC CATGGAGGGG TTGGTCGACG ACATCCTGCG TAATGTGCTG 
ACGAAAGTCG GCGGCATCGA CTGGTGCGTG ACCGAATTCA TCCGGGTGTC CGAGCGTTTG
ATGCCGGCGC ACTACTTCTA CAAGTACGCT TCGGAGTTTC ATAACGGCGC GAAGACTGAC
GCCGGTACGC CTTTACGGCT CCAGCTGTTG GGCTCCGATC CGGTGTGTCT GGCCGAGAAT
GCCGCGTTCG CCTGCGAGCT GGGCGCGCCG GTGCTGGACC TGAACTTCGG TTGCCCGGCC
AAGACCGTCA ACCGTTCCCG TGGTGGCGCA GTTCTGCTCA AGGAGCCGGA ACTGCTGCAC
ACCATTGTCA GCCAGGTGCG CCGTGCTGTG CCCAAAGACA TACCGGTCAC CGCCAAGATG
CGTTTGGGCT ACGAAAACAC CGACCTGGCG CTGGATTGCG CCAGAGCGTT GGCTGACGGC
GGGGCCGAGC AAATCGTCGT GCATGCGCGC ACCAAGGTCG ACGGCTACAA GCCGCCGGCG
CACTGGGAGT GGATCGCGCG CATCCAGGAA GTGGTCAAGG TCCCGGTAGT TGCCAACGGG
GAAATCTGGA CCGTTGAGGA TTGGCGGCGA TGCCGCGAAA TCTGCGGCGC GCGGGACATC
ATGATCGGTC GCGGGCTGGT GGCGCGCCCT GATCTCGCCC GGCAGATTGC TGCGGCGCAG
AAGGGCGAAG AGGTGGTGCC GATGACTTGG GACGCGTTGC AGCCGATGCT GCGGGTCTTC
TGGCAGGACT GTCTGGTGAA GATGACGCTG ATTCAGGCAC CGGGTCGGCT CAAGCAGTGG
CTGGTGCTGC TGACCAAAAG CTACCCCGAG GCGACCCTGA TGTTCAATAC GTTGCGCCGC
GAGACCGACT GCGATCGCAT CAGCGTATTG CTGGGCTGCG CGCCCGGTTG CTTACCCAAA
AGCTGA
 
Protein sequence
MQIALAPMEG LVDDILRNVL TKVGGIDWCV TEFIRVSERL MPAHYFYKYA SEFHNGAKTD 
AGTPLRLQLL GSDPVCLAEN AAFACELGAP VLDLNFGCPA KTVNRSRGGA VLLKEPELLH
TIVSQVRRAV PKDIPVTAKM RLGYENTDLA LDCARALADG GAEQIVVHAR TKVDGYKPPA
HWEWIARIQE VVKVPVVANG EIWTVEDWRR CREICGARDI MIGRGLVARP DLARQIAAAQ
KGEEVVPMTW DALQPMLRVF WQDCLVKMTL IQAPGRLKQW LVLLTKSYPE ATLMFNTLRR
ETDCDRISVL LGCAPGCLPK S