| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1970 |
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| Symbol | |
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| ID | 3367480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2284475 |
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| End bp | 2285647 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637652315 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235051 |
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| Protein GI | 66045210 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0699832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.38447 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCT CTCGACATCC TCGACGCGCC CTCCTGGTGG CGCTGTGCCT GTTCCCGGTC
ATTGCCGTAT GCGCCTGGCA GATCCTGCCC GACAGCAAAA GCAGCGCCGC AACTGTGACG
GTGACCCGCG GCACGATCGA AAACAGCGTC ACGGCGTTGG GTACCCTGCA GCCGCGCAGC
TACGTGGACG TGGGCTCGCA GGCCAGCGGG CAGATCATGA AAATCCACGC CCAGGTCGGC
GATCAGGTCA AGGAAGGCGA CTTGCTGGTC GAAATCGATC CTTCGACGCA AAAAGCCAAG
CTCGACGCCG CACGCTACGC CATCGACAAC CTCAAGGCGC AATTGCAGGA ACAGCGTGCG
CTGCACGAAC TGGCCGAACA GAAGCAGCAG CGCCAGAAGC GCCTCGCCGC AGGCGGTGCC
ACGCGGGCCG AGGACGTGCA GGCTGCGGAA TCGGAATTTC GCGCCACCCA GGCACGGGTC
GACATGTTCA AGGCGCAGAT TCTCGAAGCC CAGGCCGCCC TGCGCAGCGA CGAAGCAGCG
CTGGGCTACA CCCGTATTTT CGCGCCCATG AGCGGCACAG TGGTGGCCCT CGACGCACGT
GAAGGCCAGA CGCTGAACGC ACAACAACAG ACGCCGCTGA TTCTGCGCAT CGCCCGCTTG
TCGCCGATGA CGGTCTGGGC CGAGGTCTCG GAAGCCGATA TCGGCCATGT CAAACCCGGC
ATGACTGCCT ATTTCACCAC CCTGAGCGGC GGCAACCGGC GCTGGAGCAG CACCGTGCGA
CAGATCCTGC CAGTACCGCC CAGGCCGCTG GATCAAGCCA ATCAGGGCGG CGGCAGCCCG
AGCAGTGCGC GCAAGAACGG CGGTGGCCGG GTGGTGTTGT ACACCGTGCT GCTGGACGTG
GATAACAGCG ATCAGGCGCT GATGGCAGAA ATGACCGCGC AGATATTTTT CGTCGCCGAT
AAAGCCGAGA ACACACTTAC CGCGCCACTC GCGGCGTTGC GAAACGGAGC GCAGACCGAT
CGGCAGACCG CCCAGGTGTT GTCTGCCAAT GGCGAGGTGC AGAACCGTCA GGTACGCACC
GGCATCAGCG ACCGCCTGCG CGTGCAGGTA CTCGACGGCC TGAATGAAGG TGAGCGCCTG
CTGGTGCCCG CCTCTGTCGG CAGCGGGGGC TGA
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| Protein sequence | MKRSRHPRRA LLVALCLFPV IAVCAWQILP DSKSSAATVT VTRGTIENSV TALGTLQPRS
YVDVGSQASG QIMKIHAQVG DQVKEGDLLV EIDPSTQKAK LDAARYAIDN LKAQLQEQRA
LHELAEQKQQ RQKRLAAGGA TRAEDVQAAE SEFRATQARV DMFKAQILEA QAALRSDEAA
LGYTRIFAPM SGTVVALDAR EGQTLNAQQQ TPLILRIARL SPMTVWAEVS EADIGHVKPG
MTAYFTTLSG GNRRWSSTVR QILPVPPRPL DQANQGGGSP SSARKNGGGR VVLYTVLLDV
DNSDQALMAE MTAQIFFVAD KAENTLTAPL AALRNGAQTD RQTAQVLSAN GEVQNRQVRT
GISDRLRVQV LDGLNEGERL LVPASVGSGG
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