| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1961 |
|---|
| Symbol | |
|---|
| ID | 3367471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2268408 |
|---|
| End bp | 2270819 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637652306 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_235042 |
|---|
| Protein GI | 66045201 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.281016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.90568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAT CCTCCAGCCG TCTGCGCACC GGCCGCGTGA AAACGCTCGG CCTGCGTCTG
GGCGGCGTGG GGCTGGTGCT GGCGTTGAGT GTCCAAGGAC AGGCGCTGGC GGAGGAGTTC
GAATTCGATA TTCCGGCGCA GACGCTGAGC AGTGCCCTGA AAGAATTGGG CCGCCAGTGC
GATCTGCAAA TCCTCTACAA CCCCGACGAC CTGAACGGCA AGCTCAGCAG CCCGGTGCAT
GGCAGGCTGA CGCCCGAACA GGTCGTCGCC GACCTGCTGA AAAAAGCCAA CGTAGCGCAC
AGTCTTGAAG ACAACACCCT GACCCTTGGC GCTGCTGCCT CCGCACACAC CATGAACCTG
GGGCCGGTGG CGATAAAGGG CGACTCGTTC GGCATCACCA CCGAGGGCAG CGGCTCGTAT
GCGGCCACTG GCGTGAGTAT CAACAAGACC GCTCAGTCGC TGCGCGAAAC GCCGCAGTCG
GTTACCGTCA TGACCCGCCA GGTGATGGAC GACAAAAACC TCACCGGCCT CGACGAGGTG
ATGGCACAGA CGCCCGGCAT CACCTTTTCC CAACGCAATT TCGGCTCTCA TGTCTTCAGT
TCGCGGGGCT TCGCGCTGGA GGACGAGAGT TACATCATCG ATGGCGTGGC TGGCCAGGGT
TACAGCGTGA CCGGCTGGAT GACCCCGGAC ATGGAAATCT ACGACCGCGT CGAAGTGCTG
CGCGGCGCGG CCGGCTTGCT GATCGGCGCG GGCAACCCCG GTGGCGCGGT CAATCTGGTC
CGCAAGCGCC CGACCGCCCT GCCGCAGTTG TCGATCACCA CTCGCGCAGG CAGTTGGGAC
AGCTACCGGG TCGATCTGGA TGGCAGCAGC AAACTCAACG ATTCAGGCAG CATCCGCGGG
CGTTTTGTAA CGTCCTATGA AGACCGCGGC TATTTCACCG ATGGTCTGCA GAAAACCGCA
CCGTTGCTCT ACGGCATCCT GGAAACCGAC CTGAGCGAAG ACACCACCCT GACCCTGGGC
GTACGCCATC AGAACGCCGA CACCCAGGGC TTTTCGATCT TCGGTCTGCC TCGCTACAGC
AACGGCAAGG CCATCGACCT GCCGCGTTCG ACGTCGCTGG CCCAGGACTG GAACCGCCAC
CAGACCCGCA CCGACGAAGT GTTCAGCGAA CTGGAAACCC GCTTTGACGA CAACTGGAGC
GGCACACTGT CTGCCACTCA CTCCGATGGC GCTTTCGATC AGAAGGTCGC CTATGCACAG
GGCGCTATTG ATCCAGCGAC GCAGAGCGGT TCCCGGCTGG TCAGAACCCT GTTCCGCTCG
GACGATATTC ATAGCAATGG CATCGACGCG CACCTGGATG GCCGGTTCGA CGCCTTTGGC
CTGAGTCACC AGTTGACCGT CGGCGGCAAC GGGTCCGAAC AGAAACGCGA GTCGCGCTAT
GCCACGGTCA ACGCCAATCA ACCGCTGGCT ATCTTCAGCC CCGACCACGA CGCGATTGCC
GAACCTCCGC GTCCGGCCTG GAGCAGCACG GACTACAGCG ACAAGCGCTA TGGCGTCTAC
AGCAACCTGC GCCTGAGCCT GACAGAGTCG TTGAGCCTGG TGATGGGTGG CCGGGTCAGC
AGCTATGACT ATCAGACCAC GTCTGCAGGC GTGACCCGTC GCGCCCAGGA GGACAATCAG
GTCACCCCGT TTGCGGGGGT CATCTACGAC CTCAACCGGG ACTGGTCGTG GTACGCCAGT
TACACGGATA TTTTTCTGCC GCAAAGCGCC TATCGAACCG CATCAGGCAC GCTGCTTGAT
CCGGCCATCG GCGCCAGCCA TGAAACCGGA ATCAAGGGCG AGCTGTTCGA CAAACGTCTG
AATGTGTCAC TGGCGCTGTT CTATGTGAAG CAGAAGGATG TGGCCGTCGA GGATGATGCC
AATGCTGGTC AGTGCGTTAG CAATGATGCC TATGGGACCT GCTACCTGAA CGGTGATATC
CGGCGCAGCA AGGGCATCGA CATGGAAATC AGCGGCGAGC CGTTACCGGG ATTGCAGACC
TTGGCCGGCT ACACGTTCAA CATCACCCGC GGCAGTGACG GGCAATCGAT TTCAGCGGAA
ACACCCCGGC ACATGCTGCG CCTGACCAGC AGCTACACCC TGCCCGGCGC CTGGCGTCGC
TTGACCATCG GCGGCGGGGT CTCGGCGCAG AGCGGCTACT CGGAACACGA GTCGACCCAA
CCCATCGATA ACGCTGGCCG GGCCATCTGG GATGCGCGGG TTGCGTGGAA AATCGACGAA
CACTGGACGG TGGCGCTCAA CGGTAACAAC CTGCTGGATC GCAAATACTA CAAGGCCACC
GGCGACATCG ACCGCGGCAA CTACTACGGC GACCCGCGCA ACTACGTCCT GACCCTGCGC
GGTGATTTTT AA
|
|---|
| Protein sequence | MQSSSSRLRT GRVKTLGLRL GGVGLVLALS VQGQALAEEF EFDIPAQTLS SALKELGRQC
DLQILYNPDD LNGKLSSPVH GRLTPEQVVA DLLKKANVAH SLEDNTLTLG AAASAHTMNL
GPVAIKGDSF GITTEGSGSY AATGVSINKT AQSLRETPQS VTVMTRQVMD DKNLTGLDEV
MAQTPGITFS QRNFGSHVFS SRGFALEDES YIIDGVAGQG YSVTGWMTPD MEIYDRVEVL
RGAAGLLIGA GNPGGAVNLV RKRPTALPQL SITTRAGSWD SYRVDLDGSS KLNDSGSIRG
RFVTSYEDRG YFTDGLQKTA PLLYGILETD LSEDTTLTLG VRHQNADTQG FSIFGLPRYS
NGKAIDLPRS TSLAQDWNRH QTRTDEVFSE LETRFDDNWS GTLSATHSDG AFDQKVAYAQ
GAIDPATQSG SRLVRTLFRS DDIHSNGIDA HLDGRFDAFG LSHQLTVGGN GSEQKRESRY
ATVNANQPLA IFSPDHDAIA EPPRPAWSST DYSDKRYGVY SNLRLSLTES LSLVMGGRVS
SYDYQTTSAG VTRRAQEDNQ VTPFAGVIYD LNRDWSWYAS YTDIFLPQSA YRTASGTLLD
PAIGASHETG IKGELFDKRL NVSLALFYVK QKDVAVEDDA NAGQCVSNDA YGTCYLNGDI
RRSKGIDMEI SGEPLPGLQT LAGYTFNITR GSDGQSISAE TPRHMLRLTS SYTLPGAWRR
LTIGGGVSAQ SGYSEHESTQ PIDNAGRAIW DARVAWKIDE HWTVALNGNN LLDRKYYKAT
GDIDRGNYYG DPRNYVLTLR GDF
|
|---|
| |