| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1914 |
|---|
| Symbol | |
|---|
| ID | 3367424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2187969 |
|---|
| End bp | 2188910 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637652260 |
|---|
| Product | transaldolase B |
|---|
| Protein accession | YP_234996 |
|---|
| Protein GI | 66045155 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0176] Transaldolase |
|---|
| TIGRFAM ID | [TIGR00874] transaldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00163672 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCA AGCTGGATCA ACTCAAGAAA TTCACCACCG TTGTTGCTGA CACCGGCGAC
TTCGGCGCAA TCAAGAGCCT CGAACCCGAG GACGCCACCA CCAACCCTTC CCTGCTGCTC
AAGGCCGCTT CCGACGCAAA CAACGCCAAG ATGCTGGGCG AAGCGTTCGA CGGTAGCAAG
GGCGACATCG GCCTGGCCTG CGACCGCTTT GCAGTCGCCA TCGGTCAGGA GATTCTCAAG
GTGGTTCCGG GCCGCGTATC CACTGAAGTG GACGCACGCC TCTCGTTCGA CACCAACGCC
CTGATCGAGC GCAGTGAGCG TTTGATCGGT CTGTACGACG CCGCAGGCAT CAAGCGTGAT
CGGGTGCTGA TCAAACTGGC CGCCACCTGG GAAGGTATCC GCGCAGCTGA GAAACTCGAG
AAGGATGGCA TCCAGACCAA CCTGACCTTG CTGTTCTCCT TCGCCCAGGC AGTCGCCTGC
GCCGAGGCCG GGGTGTTCCT GATTTCGCCG TTCGTGGGCC GTATCTACGA CTGGTACAAG
AAGTCGACAG GCACCGACTA CACCGGCGCA GAAGACCCGG GCGTGCAGTC GGTAACGCGC
ATCTACAACT ACTACAAGGC CAACGACTTC AAGACCGTGG TCATGGGTGC GAGCTTCCGC
AACCTGAACC AGATCGAACA GCTGGCCGGT TGTGATCGCC TGACCATCAG CACCGATCTG
CTCAAGAAGC TGGCGGAAGA TACCGGCACT CTGGAGCGTA AGCTTACCCC GGATAAAGCC
GGTGAGAAAC GTTCGGATAC GGTCAAGAAC TTGACCGAAA GCCAGTTCCG CTGGGCTTCC
AACGAAGATG CCATGGCCAC TGAAAAGCTG GCTGAAGGTA TTCGCCAGTT CGCGCGCGAT
CAGGAAAAGC TGGAAGCACT GCTCTCCGCC AAAAAAGCCT GA
|
|---|
| Protein sequence | MTSKLDQLKK FTTVVADTGD FGAIKSLEPE DATTNPSLLL KAASDANNAK MLGEAFDGSK
GDIGLACDRF AVAIGQEILK VVPGRVSTEV DARLSFDTNA LIERSERLIG LYDAAGIKRD
RVLIKLAATW EGIRAAEKLE KDGIQTNLTL LFSFAQAVAC AEAGVFLISP FVGRIYDWYK
KSTGTDYTGA EDPGVQSVTR IYNYYKANDF KTVVMGASFR NLNQIEQLAG CDRLTISTDL
LKKLAEDTGT LERKLTPDKA GEKRSDTVKN LTESQFRWAS NEDAMATEKL AEGIRQFARD
QEKLEALLSA KKA
|
|---|
| |