| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1910 |
|---|
| Symbol | |
|---|
| ID | 3367420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2184860 |
|---|
| End bp | 2185561 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637652256 |
|---|
| Product | VacJ-like lipoprotein |
|---|
| Protein accession | YP_234992 |
|---|
| Protein GI | 66045151 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2853] Surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.429017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00152873 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTGA CCGGTGCAGG CCTTATCAAA CGTTTGCTGC AATTGTCCCT GTGTGCCGGC
ATCGCGCTGG TGCCGGTGGC CGTGCAGGCC GCTGAAGATG ATCCGTGGGA AGGCATCAAC
CGTCCCATTT TCAAATTCAA CGATATCCTT GACGCTTACA CGCTCAAGCC GTTGGCCAAG
GGATATCAGT ACATCGCACC GCAATTCGTC GAAGACGGTA TCCATAACTT CTTCAGCAAC
ATCGGCGATG TCGGCAATCT GGCGAACAAC GTGCTGCAAG CCAAGCCTGA AGCGGCTGGC
GTCGACACTG CGCGTCTGAT CGTCAACACC ACCTTCGGCC TGCTGGGCTT CATCGACGTG
GGCACCCGCA TGGGCCTGCA ACGCAATGAT GAGGACTTCG GTCAGACGCT GGGCTACTGG
GGCGTGCCGA GCGGCCCGTT CGTGGTCATT CCGTTGCTGG GGCCAAGCAC TGTACGTGAT
GCAATCGCCA AGTACCCGGA CACCTACACC TCGCCCTACC GATACATCGA TCACGTTCCG
ACCCGTAACA CTGCACTGGG CGTCAACCTG ATCGATACGC GTGCCAGCCT GTTGTCTGCC
GAGCGCATGG TCAGCGGTGA TCGCTACACC TTCATTCGCA ATGCCTACCT GCAGAACCGC
GAGTTCAAGG TCAAGGACGG CAAGGTCGAA GACGATTTTT AA
|
|---|
| Protein sequence | MPVTGAGLIK RLLQLSLCAG IALVPVAVQA AEDDPWEGIN RPIFKFNDIL DAYTLKPLAK
GYQYIAPQFV EDGIHNFFSN IGDVGNLANN VLQAKPEAAG VDTARLIVNT TFGLLGFIDV
GTRMGLQRND EDFGQTLGYW GVPSGPFVVI PLLGPSTVRD AIAKYPDTYT SPYRYIDHVP
TRNTALGVNL IDTRASLLSA ERMVSGDRYT FIRNAYLQNR EFKVKDGKVE DDF
|
|---|
| |