| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1906 |
|---|
| Symbol | |
|---|
| ID | 3367416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2181325 |
|---|
| End bp | 2182569 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637652252 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_234988 |
|---|
| Protein GI | 66045147 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000396781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00508578 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGAC CGTTACCCAT CTTCATCGGC ATGCGCTATA CCCGCGCCAA ACGCCGCAAA
AGCTTCATCT CGTTCATTTC GATGACCTCG ATGATCGGTC TGGCACTCGG TGTCCTGGCG
ATGATCGTGG TGCTGTCGGT CATGAACGGT TTCCAGCGGG AAATGAGCTC GCGGATTCTC
GGCATGGTGC CGCACGCGGT GATTGCCGGT AGCACTCCGG TCGATGACTG GAAACCGCTG
GCCGACGCGG CGCTGAAAAA CCCTGAAGTG ACCGCTGCCG TGCCGTTCAC CGACATGGAA
GGCATGCTCT CCTACAAGGG CTCGATGCAG CCGATCCAGA TCAGCGGCGT AGACCCGGCG
CTGGAACATG AGGTGTCGAT CGTCACGCAG CACATCACCC GCGGAAACCT CGAAGACCTC
AAGCCGGGCG AGTTCGGCGT AGTGCTCGGC GACATCACCG CGCGCCGCTT TCGCCTGAGC
ATCGGCGACA AGCTGACCCT GATCGTCCCG GAAGTCAGCA GCGCTCCTGG CGGCATCACG
CCGCGCATGC AACGCCTGAC CGTCGTGGGT ATCTTCAAGG TCGGTGCCGA ACTGGATGGT
TCGATGGGCC TGATCAACAT CGCCGATGCG GCGCAGATGC AACGCTGGCA GCCCAATCAG
GTTCAGGGCG TGCGGCTGGC GCTCAAGGAT CTGTACAAGG CACCCCAGGT GTCCACCGCC
ATTGCCGCCG GTCTGGGTGA GGGCTATCGC GCCGATGACT GGACCCACAC CCAGGGCAGC
CTGTTCAGCG CCATGAAGAT GGAAAAGACC ATGATCGGTC TGTTGCTGCT GATGATCGTC
GCCGTGGCAG CGTTCAACAT CATTGCCACG CTGATCATGG TGGTCAACGA CAAGGGCGCA
GACATCGCCA TCCTGCGCAC CATCGGCGCC ACGCCGCGGC AGATCATGGC GATCTTCGTG
GTTCAGGGCA CCGTCATCGG CATCGTCGGT ACCTTGATCG GCGGCATCCT GGGGATTATT
GCGGCGCTGA ACGTCAGCAG CCTGGTGGGC TGGGTCGAGC GGGTCAGCGG TCAGCACATC
TTCAGTTCCG ATGTGTACTT CATCAGCAAC CTGCCTTCCG AACTGCAGGC CGGTGACGTG
CTGCTGATCT GCAGTGCCGG GTTTATCCTG AGCTTTCTGG CGACCATCTA CCCTGCGTGG
CGCGCCGCGC AGATCCAGCC AGCGCACGCA CTGCGTTACG AGTGA
|
|---|
| Protein sequence | MFRPLPIFIG MRYTRAKRRK SFISFISMTS MIGLALGVLA MIVVLSVMNG FQREMSSRIL
GMVPHAVIAG STPVDDWKPL ADAALKNPEV TAAVPFTDME GMLSYKGSMQ PIQISGVDPA
LEHEVSIVTQ HITRGNLEDL KPGEFGVVLG DITARRFRLS IGDKLTLIVP EVSSAPGGIT
PRMQRLTVVG IFKVGAELDG SMGLINIADA AQMQRWQPNQ VQGVRLALKD LYKAPQVSTA
IAAGLGEGYR ADDWTHTQGS LFSAMKMEKT MIGLLLLMIV AVAAFNIIAT LIMVVNDKGA
DIAILRTIGA TPRQIMAIFV VQGTVIGIVG TLIGGILGII AALNVSSLVG WVERVSGQHI
FSSDVYFISN LPSELQAGDV LLICSAGFIL SFLATIYPAW RAAQIQPAHA LRYE
|
|---|
| |