| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1898 |
|---|
| Symbol | |
|---|
| ID | 3367408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2172227 |
|---|
| End bp | 2173489 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637652244 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_234980 |
|---|
| Protein GI | 66045139 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0191579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0647727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT CGGCCCTGGA CGGTTCGCAA CACCCCCTCA AAAGCAGCTT CTTCCTGCTG
TTTCTGACGA TCTTCATCCC CTTCGGGCTG GGGCATTTCG TTTCCTACCT GTTTCGTACC
GTCAACGCAG TGATCTACGT CGACCTGCAA ACCGACCTGA GCTTGCCCGC CAGCAGTCTG
GGTTTGCTGA CTGGTGTGTA CTTTCTGACC TTCGCCGCCG CACAGATTCC GCTTGGCGTG
ATGCTGGACC GCTATGGGCC GCGCAGCGTT CAGGCGCCGA TGCTGCTGTT CGCGGTCGCC
GGCTCGGTCA TCTTCAGTAT TTCCAGCACC GAGACAGGGT TGTTGATCGG GCGAGGGCTG
ATTGGCCTGG GGGTAGCGGG CTCGCTGATG AGTGCGATCA AAGCGTGTGC CATCTGGTTG
CCGGTCGAGC GTTTGCCGCT GAGTACCGCC TGCCTGCTGT CGATTGGCGG GCTGGGGGCG
ATGGCGTCAA CCACGCCATT ACATGCGCTG CTGAGCTGGT TGACCTGGCG AGAGGCGTTT
CTGGTTCTGG CGCTGCTGAC CTTGTGTGTG GCGGTGGTGA TACACCTTAG CGTTCCCAAA
GCCTACGAGA GCAAAAAAAC TCGCTACAGC GATATGTTTG CCGCGGTCGG CAAGCTGTAC
GCGTCGTGGA CATTCTGGCG TCTGGCGTTG TATTCGGTGT TCGCGCATGC CATCTACATG
TCGGTGCTGT CATTGTGGAT GGGGCCGTGG TTGCGCGATA TGGCCGGCCT GAGTGATTCC
GCTATGGCCA ATGTGCTGTT GTTCGGAGCC ATCGCGATGG TGGCAGGGGC TCTGACGTTC
GGCGCGATCA CCGACTACCT GCGCAGGTTC GGCGTACAGC CGATCATGAT CTGTGGCACC
GGTATGCTGA TCTTTATCGG CTTTCAGGTG CTGATGGCCA GCGGCTTGCC GGTATCGCCT
TACCTGATTG CCATGGGCTT CAGCTTCTTT GGCACCTCGA CGACCATGAA CTACGCCATC
GTGGCGCAAT CGGTGTCGCC GGAGCTGGCG GGCAGGGTCA GTTCCTCGTT CAATCTGGTG
GTGTTCGTGC TGGCGTTTTT CCTGCAGTGG CTGATGGGAG CAGTACTTAA TCTGTGGCCA
GCGCCCCAGG GTGCCGGTCA CCCGCTTGAG GCTTATCAGT GGTCGTTGGG CCTCATGATT
ACGCTGCAAT TGCCTGGCGT GCTGCTCTGG CTCAGCTTTC GGCCCTGGAA ACGCAAGGTC
TGA
|
|---|
| Protein sequence | MSSSALDGSQ HPLKSSFFLL FLTIFIPFGL GHFVSYLFRT VNAVIYVDLQ TDLSLPASSL
GLLTGVYFLT FAAAQIPLGV MLDRYGPRSV QAPMLLFAVA GSVIFSISST ETGLLIGRGL
IGLGVAGSLM SAIKACAIWL PVERLPLSTA CLLSIGGLGA MASTTPLHAL LSWLTWREAF
LVLALLTLCV AVVIHLSVPK AYESKKTRYS DMFAAVGKLY ASWTFWRLAL YSVFAHAIYM
SVLSLWMGPW LRDMAGLSDS AMANVLLFGA IAMVAGALTF GAITDYLRRF GVQPIMICGT
GMLIFIGFQV LMASGLPVSP YLIAMGFSFF GTSTTMNYAI VAQSVSPELA GRVSSSFNLV
VFVLAFFLQW LMGAVLNLWP APQGAGHPLE AYQWSLGLMI TLQLPGVLLW LSFRPWKRKV
|
|---|
| |