| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1896 |
|---|
| Symbol | |
|---|
| ID | 3367406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2166974 |
|---|
| End bp | 2170426 |
|---|
| Gene Length | 3453 bp |
|---|
| Protein Length | 1150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637652242 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_234978 |
|---|
| Protein GI | 66045137 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.482284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGTTC TGCGTCTACC GCATCTTTCT GCCGCTGCAG GCAAACAACA CTGGGGCAAT
CTTCCCGGTG CCACACTGAG CCTGGCCATT GCCGAAGCCG CCAGCGCGGC CAAGCGCTTC
ACCCTGCTCC TGACCGCCGA CAGCCAAAGC GCCGAGCGGC TCGAGCAAGA GCTGAAGTTT
TTTGCACCTA CGCTGCCGGT TCTGCACTTC CCGGACTGGG AAACCCTGCC CTACGACCTG
TTTTCGCCGC ACCAGGACAT CATTTCCCAG CGCATTGCCA GCCTTTATCG CCTGCCGGAA
CTGGAGCATG GCGTTTTGGT AGTCCCCATC ACCACCGCCC TACACAGACT GGCGCCGACC
AAATTTCTGC TCGGCAGCAG CCTGGTGCTG GATGTCGGCC AGAAGCTCGA TGTGGAAGCC
ATGCGTACGC GCCTGGAAGC CAGCGGCTAC CGGTATGTGG ACACGGTCTA CGAACATGGC
GAGTTCACCG TGCGCGGGGC GCTGATCGAT CTGTTCCCGA TGGGCAGCAA ACTGCCGTTT
CGGATCGACC TGTTCGACGA TGAAATCGAA ACGCTGCGCA CCTTCGATCC GGACACCCAG
CGCTCCATCG ACAAAGTCGA GTCGGTGCGC CTGTTGCCCG CCCGTGAATT CCCGTTACAG
AAAGAAGAAG TCACGCGCTT CAAGGCGCGC TTTCGCGAGC GCTTCGACGT GGACTTCCGA
CGCAGCCCGA TTTTCCAGGA CTTGAGCAGC GGTATCACAC CTGCCGGCAT CGAGTACTAC
ATCCCGCTGT TCTTCGAAGA AACCTCGACG CTGTTCGATT ATCTGCCGCA GGACACCCAA
GTGTTTTCCC TGCCGGGCAT CGAACAGGCT GCCGAGAACT TCTGGAACGA CGTGCGCAAT
CGCTATGAAG AACGCCGCGT CGACCCTGCA AGGCCGCTGC TGCCGCCGGC CGAGTTGTTT
CTACCGGTGG AAGACTGCTT CGCGCGCCTG AAAAACTGGC CGCGCGTGGT TGCCAGCCAG
CAGGATGTCG ACGCCGGTGC CGGACGCGAG CGCTTCCCGG CGCAGTCCCT GCCGGACCTG
TCCATCGAAG CCAAGGCCAC TCAACCACTG GCGGCCCTGT CGACGTTTCT GGATGACTTC
CCCGGTCGCG TGCTGTTCAC CGCCGAGTCC GCCGGACGCC GGGAAGTACT GCTGGAACTG
CTCGAACGCC TCAAGCTGCG CCCCAAAACC GTCGACAGCT GGCTGGATTT CGTCGACGGC
AAGGACCGAC TGGCAATCAC CATCGCACCG CTTGACGAAG GCCTGCTGCT GGAACAACCA
GCCCTGGCGC TGATCGCAGA AAGCCCGCTG TTCGGCCAGC GCGTCATGCA GCGCCGTCGC
CGCGAAAAGC GCACCGACGG CGGCAACAAC GATGCGGTCA TCAAGAACCT CACCGAGCTG
CGCGAAGGCG CGCCGGTGGT GCACATCGAT CATGGCGTGG GCCGTTATCT CGGGCTTGCG
ACCCTTGAAG TCGAAAACCA GGTCGCCGAA TTCCTGATGC TGGCCTACGC CGAAGACGCC
AAGCTGTACG TACCCGTCGC CAACCTGCAC CTGATTGCCC GCTACACCGG CAGCGACGAC
GAAACCGCGC CGCTGCACCG CCTGGGTTCG GAAACCTGGC AGAAAGCCAA ACGCAAGGCT
GCCGAGCAGG TCCGTGACGT GGCCGCCGAA CTGCTGGATA TCTACGCGCG TCGCGCGGCC
CGCGAAGGCT ATGCGTTTGC CGACCCGAAA GCCGATTACG CGACCTTCAG CGCAGGCTTC
CCGTTCGAAG AGACGCCGGA TCAGCAAACC ACCATCGACG CCGTGCGCGC CGACATGCTG
GCGCCCAAGC CGATGGATCG TCTGGTCTGT GGCGACGTGG GTTTCGGCAA GACCGAAGTG
GCCATGCGTG CCGCCTTCAT CGCCGTGCAT GGCGGGCGTC AGGTGGCCAT TCTGGTGCCG
ACCACCCTGC TCGCGCAGCA GCACTACAAC AGTTTCCGCG ACCGTTTCGC CGACTGGCCG
GTGACCGTCG AGGTGATGAG CCGCTTCAAG TCGGCCAAGG AAGTCAGCGC CGCAGTTGCC
GATCTGGCCG AGGGCAAGAT CGACATCGTC ATCGGGACGC ACAAGCTGTT GCAGGATGAC
GTCAAGATCA AGAACCTCGG CTTGGTGATC ATCGACGAAG AACACCGGTT TGGCGTGCGC
CAGAAAGAAC AGCTCAAGGC GCTGCGCAGC GAGGTCGATA TTCTGACCCT GACCGCAACG
CCGATCCCGC GCACCCTGAA CATGGCCGTG TCTGGCATGC GTGATCTGTC AATCATCGCC
ACGCCACCGG CGCGTAGGCT GTCGGTGCGT ACCTTCGTGA TGGAGCAGAA CAAGCCGACC
ATCAAGGAAG CCCTGCTGCG TGAGCTGTTG CGCGGCGGCC AGGTCTATTA CCTGCACAAC
GACGTCAAGA CCATCGAGAA ATGCGCCGCC GATCTGGCCG AGCTGGTGCC GGAAGCGCGT
ATCGGCATCG GACACGGGCA GATGCGCGAG CGCGAACTCG AACAGGTGAT GAGCGACTTC
TACCACAAGC GCTTCAATGT GCTGATCGCC TCGACCATCA TCGAGACCGG CATCGACGTG
CCGAGCGCCA ACACCATCAT CATCGAGCGC GCCGACAAGT TCGGTCTGGC CCAGTTGCAC
CAGTTGCGCG GTCGTGTCGG GCGCAGTCAC CACCAGGCTT ACGCCTACCT GCTGACCCCG
CCACGCAAAC AGATTACCCA CGACGCCGAA AAGCGTCTGG AAGCGATTGC CAATACTCAG
GACCTTGGCG CGGGCTTCGT GCTCGCCACC AATGACCTGG AGATCCGTGG CGCAGGCGAA
CTGCTCGGGG ACGGCCAGAG CGGCCAGATC CAGGCGGTGG GCTTTACCCT GTACATGGAA
ATGCTCGAGC GCGCGGTGAA GTCGATTCGC AAGGGCGAAC AGCCCAATCT CGATCAGCCA
CTGGGCGGCG GACCGGAAAT CAACCTGCGC GTGCCGGCCT TGATCCCCGA AGCCTACCTG
CCGGATGTGC ACACGCGCCT GATTCTCTAC AAGCGCATTG CCAACGCTGC TGACGAAGAA
GCACTGAAGG ACCTGCAGGT CGAAATGATC GACCGCTTCG GCCTGCTGCC GGAACCGACC
AAGAATCTGG TGCGTATCAC GCTGCTCAAA CTGCACGCCG AACAGCTGGG CATCCGGAAA
ATCGACGGTG GCCCGCAAGG TGGCCGTATC GAGTTCGCGG CCGAGACGCC GGTTGATCCT
TTGACCCTGA TCAAGCTGAT CCAGAGCCAG CCCAACCGCT ACAAGTTCGA AGGCGCCACG
CTGTTCAAAT TCATGGTTCC CATGGAGCGC CCGGAAGAGC GCTTCAACAC GATCGAAGCG
CTGCTTGAGC GCCTGACCCC GAAAACTGCT TGA
|
|---|
| Protein sequence | MPVLRLPHLS AAAGKQHWGN LPGATLSLAI AEAASAAKRF TLLLTADSQS AERLEQELKF
FAPTLPVLHF PDWETLPYDL FSPHQDIISQ RIASLYRLPE LEHGVLVVPI TTALHRLAPT
KFLLGSSLVL DVGQKLDVEA MRTRLEASGY RYVDTVYEHG EFTVRGALID LFPMGSKLPF
RIDLFDDEIE TLRTFDPDTQ RSIDKVESVR LLPAREFPLQ KEEVTRFKAR FRERFDVDFR
RSPIFQDLSS GITPAGIEYY IPLFFEETST LFDYLPQDTQ VFSLPGIEQA AENFWNDVRN
RYEERRVDPA RPLLPPAELF LPVEDCFARL KNWPRVVASQ QDVDAGAGRE RFPAQSLPDL
SIEAKATQPL AALSTFLDDF PGRVLFTAES AGRREVLLEL LERLKLRPKT VDSWLDFVDG
KDRLAITIAP LDEGLLLEQP ALALIAESPL FGQRVMQRRR REKRTDGGNN DAVIKNLTEL
REGAPVVHID HGVGRYLGLA TLEVENQVAE FLMLAYAEDA KLYVPVANLH LIARYTGSDD
ETAPLHRLGS ETWQKAKRKA AEQVRDVAAE LLDIYARRAA REGYAFADPK ADYATFSAGF
PFEETPDQQT TIDAVRADML APKPMDRLVC GDVGFGKTEV AMRAAFIAVH GGRQVAILVP
TTLLAQQHYN SFRDRFADWP VTVEVMSRFK SAKEVSAAVA DLAEGKIDIV IGTHKLLQDD
VKIKNLGLVI IDEEHRFGVR QKEQLKALRS EVDILTLTAT PIPRTLNMAV SGMRDLSIIA
TPPARRLSVR TFVMEQNKPT IKEALLRELL RGGQVYYLHN DVKTIEKCAA DLAELVPEAR
IGIGHGQMRE RELEQVMSDF YHKRFNVLIA STIIETGIDV PSANTIIIER ADKFGLAQLH
QLRGRVGRSH HQAYAYLLTP PRKQITHDAE KRLEAIANTQ DLGAGFVLAT NDLEIRGAGE
LLGDGQSGQI QAVGFTLYME MLERAVKSIR KGEQPNLDQP LGGGPEINLR VPALIPEAYL
PDVHTRLILY KRIANAADEE ALKDLQVEMI DRFGLLPEPT KNLVRITLLK LHAEQLGIRK
IDGGPQGGRI EFAAETPVDP LTLIKLIQSQ PNRYKFEGAT LFKFMVPMER PEERFNTIEA
LLERLTPKTA
|
|---|
| |