Gene Psyr_1835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1835 
Symbol 
ID3367344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2114781 
End bp2116145 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content62% 
IMG OID637652183 
Productamino acid permease-associated region 
Protein accessionYP_234920 
Protein GI66045079 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID[TIGR00908] ethanolamine permease 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.355552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.288661 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAC AACTCAAGCC GACGCTCGGC ACGATTCATT TATGGGGGAT CGCGGTAGGG 
CTGGTGATTT CCGGCGAATA CTTCGGCTGG AGCTACGGCT GGGGCGTTGC GGGTACGCTG
GGCTTTTTGG TAACAGCCCT GATGGTTGCC ACCATGTACA CCTGTTTCAT TTTCAGTTTT
ACCGAGCTCA CCACCGCCAT CCCGCACGCC GGCGGTCCGT TCGCCTACAG CCGTCGTGCC
TTTGGCGAAA AAGGCGGACT GATCGCAGGC ATGGCCACCC TGATCGAGTT CGTCTTTGCG
CCACCGGCCA TTGCCATGGC GATCGGTGCG TACCTTAATG TGCAATACCC GGGGCTGGAC
CCCAAGCATG CGGCAGTCGG CGCCTACATC GTCTTCATGG CGCTCAACAT CGTGGGCGTG
AAGCTCGCCG CAACCTTCGA GCTGGTGGTG TGCATTCTGG CCGTCGCCGA GTTGCTGGTG
TTCATGGGCG TCGTCGCGCC TGCCTTCAGT TTCAGCAACT TCGCCCTCAA CGGCTGGGCC
GGTTCGCAGA CCTTCGGACC CGAAGCCATT GCCGGCATGT TCGCTGCCAT CCCCTTCGCC
ATCTGGTTCT TCCTGGCCAT CGAAGGCGCT GCAATGGCCG CCGAAGAAGC CAAGGACCCG
AAACGCACCA TCCCGAAGGC CTACATCAGT GGCATTCTGA CCTTGGTGAT ACTGGCGATC
GGCGTCATGC TGTTTGCCGG TGGCGTGGGC GACTGGCGCA CCCTGGCCAA CATCAACGAT
CCGCTGCCGC AGGCCATGAA AGCCGTGGTC GGTGACAGTT CCGGCTGGCT GCACATGCTG
GTGTGGATCG GCCTGTTCGG TCTGGTCGCC AGCTTCCACG GGATCATCAT GGGTTACTCG
CGCCAGTTCT TCGCCCTCGC CCGCGCCGGC TACCTGCCCG CCTCGCTGGC CAGGCTTTCG
CGCTTCCAGA CGCCGCACCG GGCAATCATC GCCGGCGGTC TGATCGGCAT CGCCGCGATC
TACAGCGACG GCCTGATCAA CCTGAGTGGC ATGACGCTGA CCGCTGCGAT GATCACCATG
GCCGTGTTCG GCGCCATCGT CATGTACATC ATGAGCATGC TCAGCCTGTT CAAACTGCGC
AAGACCGAGC CTGGCCTGGA GCGCACGTTC CGCGCCCCCG GTTATCCGGT AGTGCCCGGC
ATCGCCCTGG CGCTGGCCGT CGTGTGTCTG GTGGCAATGG CCTGGTTCAA CGCATTGATC
GGCCTGATTT TCCTCGGCCT GATGGCCGTC GGCTTCATCT ACTTCAGCCT GACCGCCAAA
TTGCGTGCCG ACGCGCCGAC CGACGCGATG CTGACCGGGG AGTAA
 
Protein sequence
MSTQLKPTLG TIHLWGIAVG LVISGEYFGW SYGWGVAGTL GFLVTALMVA TMYTCFIFSF 
TELTTAIPHA GGPFAYSRRA FGEKGGLIAG MATLIEFVFA PPAIAMAIGA YLNVQYPGLD
PKHAAVGAYI VFMALNIVGV KLAATFELVV CILAVAELLV FMGVVAPAFS FSNFALNGWA
GSQTFGPEAI AGMFAAIPFA IWFFLAIEGA AMAAEEAKDP KRTIPKAYIS GILTLVILAI
GVMLFAGGVG DWRTLANIND PLPQAMKAVV GDSSGWLHML VWIGLFGLVA SFHGIIMGYS
RQFFALARAG YLPASLARLS RFQTPHRAII AGGLIGIAAI YSDGLINLSG MTLTAAMITM
AVFGAIVMYI MSMLSLFKLR KTEPGLERTF RAPGYPVVPG IALALAVVCL VAMAWFNALI
GLIFLGLMAV GFIYFSLTAK LRADAPTDAM LTGE