| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1730 |
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| Symbol | |
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| ID | 3367235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1963800 |
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| End bp | 1965008 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637652076 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_234816 |
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| Protein GI | 66044975 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACTG CTGCCGCTGA AAACACATCT GCCCCGGCTC CTGAACAGGA GCCGAAGTCC
GGCAAGCGCA CGTTCATGCT GATCGGGCTT GCCATTGTCG TGGTGATCCT CGCACTGGGC
ATCTGGGCCT GGTACGAGAT CTACGGCCAA TGGAGCGAAG AGACCGACGA TGCCTATGTG
AATGGCAACG TGGTCGAAAT CACCCCGCTG GTCACCGGAA CCGTCATCAG TATTGGTGCG
GACGATGGTG ATCTGGTGCA CGAAGGGCAG GTTCTGCTCA AGTTCGACCC GAGCGATGCC
GAAGTCTCGC TGCAAAGCGC CGAGGCCAAT CTGGGCAAGG TCGTGCGCCA GGTGCGCGGC
CTCTATAGCA ATGTCGATGG CATGAAGGCG CAACTGGCCG CGCAGCGTGC TGCTGTGCAG
ACCGCTCAGG ACAACTATAA CCGTCGTCGC AGCCTCGCAG CCGGCGGGGC GATTTCCCAG
GAAGAGCTGT CGCACGCCAG GGACAGCCTG ACCAGCGCGC AGAGCGCCCT GAACAATATT
CAGCAGCAAT TGAGCACCAG CGTGGCGCTG GTCGATGACA CCGTTGTGTC CTCGCACCCG
GACGTCAAGG CAGCGGCTGC GCAGTTGCGT CAGGCCTACC TGACCAACGC ACGTTCAACA
CTCGTGGCAC CGGTCACCGG CTACGTGGCC AAGCGCACCG TGCAACTGGG GCAACGCATT
CAGCCGGGCA CCGCTACCAT GGCGGTCATC CCGCTGGATC AGTTGTGGAT CGATGCCAAC
TTCAAGGAGA CCCAGTTGGG CAAGATGCGC ATCGGTCAGC CGGTGGAGAT CAGCTCCGAC
CTGTATGGCA GCGATGTGAA GTACAGCGGC ACCATCGACA GCCTGGGGGC CGGTACCGGC
AGTGCCTTTG CGTTGCTGCC TGCGCAGAAC GCCACCGGCA ACTGGATCAA GATCGTCCAG
CGCGTGCCGG TGCGGGTGCA TATCAACCCT GAAGAACTGG CGAAGTACCC ATTGCGTATC
GGCCTGTCGA CCACGGTTGA AGTCAACCTG CATGACCAGA GCGGTCCGGT CCTGGCGCAA
CAGCCGCGCA AGCAGGCCGC TTTCAGCACT CAGGTGTACA CCGAGCAGCT GGCTGACGCC
GACGCGCTGA TCGCCCGCCT GATTCATGAG AACAGTGCGC CCGGTGGCAA GACTGCCGTT
CAGCGCTGA
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| Protein sequence | MATAAAENTS APAPEQEPKS GKRTFMLIGL AIVVVILALG IWAWYEIYGQ WSEETDDAYV
NGNVVEITPL VTGTVISIGA DDGDLVHEGQ VLLKFDPSDA EVSLQSAEAN LGKVVRQVRG
LYSNVDGMKA QLAAQRAAVQ TAQDNYNRRR SLAAGGAISQ EELSHARDSL TSAQSALNNI
QQQLSTSVAL VDDTVVSSHP DVKAAAAQLR QAYLTNARST LVAPVTGYVA KRTVQLGQRI
QPGTATMAVI PLDQLWIDAN FKETQLGKMR IGQPVEISSD LYGSDVKYSG TIDSLGAGTG
SAFALLPAQN ATGNWIKIVQ RVPVRVHINP EELAKYPLRI GLSTTVEVNL HDQSGPVLAQ
QPRKQAAFST QVYTEQLADA DALIARLIHE NSAPGGKTAV QR
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