| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1717 |
|---|
| Symbol | |
|---|
| ID | 3367222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1946230 |
|---|
| End bp | 1947948 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637652063 |
|---|
| Product | TPR repeat-containing von Willebrand factor, type A |
|---|
| Protein accession | YP_234803 |
|---|
| Protein GI | 66044962 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCG GACTCTGGCC GCACTGGTTT CGCCCGGAAT GGCTGCTGAT CACGCCCTTG
CTGGCGCTGC TGATCTGGCG ACTCTGGCAC CGGCAGAAAC GCGCCGGACG CTGGCAAATG
CTGCTGCCCA CTCACTTTCA TGAGGTGTTG CTCAACGGCG GGCGCGGCAG CAACAGCAAA
CTGCCATGGA TCGCGCTGGG GCTCGCCTGG TTGCTGGCCC TTTTCGCCTT GCTGGGCCCC
AGTTGGCAGC GCGTCGAACA GATCAGCCAG AAACCGGTCG ATCCGTTGGT GGTGATTCTC
GAGCTCACCC CGCAGATGCT CGCCACCGAC ACGCCGCCTA CCCGCCTGGA ACAGGCCAGA
CGCAAGCTGC TGGACCTGTT GCAAAAACGC AGCGATGCAC AGACCGCCAT CGTCGTCTAC
GCAGGCAGCG CACACACCCT GGTGCCGCTG TCCGATGATC TGGTCACCAG CCACAACCTG
CTGGAAGCCA TCAGACCGTC GATCATGCCG GTGACCGGCC AGCGCGCCGA TCTGGCCGTG
CAGAAAGCGC TGCACCTGCT CAAACAGGGC GCATTGGGTC AGGGGCGGAT TCTGCTGATC
ACCTCGTCGC TGAGCGAACA GGAACGTCAG GGCATCCGCG CCGCGTTGCG CGGGCAATCG
CCGCCGCTGT TGATTCTCGG GGTCGGCACA GCGGAAGGCG CACCGGTCAC GCAGGAAAAC
GGCAGCCTGC TCAAGGATGA TCAAGGTGCG ATTCTGGTGC CGCGTCTGGA CAGTACCAGC
CTCAACGACT TCGCCGATCA GGTGGGTGGC AGCTATCGTC AGGCACGCGG CGATGAAGAA
GACTTGCGCA GCCTCGGTCT GCTGGCCAGC CCCCGACACA TGACCCGCGA CGGTCAGGTC
GTGCAGCTCG ACACTTGGGC TGACCAGGGC CACTGGTTGC TGCTGCCGCT GTTGCTGATC
GCGGCACTGG CCGGCCGGCG CGGCTGGCTG TTCTGCCTGC CGCTGCTGTT CATGTTTCCG
CAGAACAGCC AGGCGTTCGA GTTTCAGGAC CTGTGGCTGC GTCCCGACCA ACAGGGCCAG
CGCCTGCTGG AACAGCATCG GCCGGCCGAG GCCGCGCAGC GCTTCGAAGA CTCGCGCTGG
AAAGGCGTGG CGTTGTACCA GGCGCAAGAC TACGCCAGCG CCGCCCGGCA GTTTGCCGAA
GGCAATAGCG CCGCCGACCA CTACAATCGT GGCAATGCCC TGGCCCGCAG CGGTGAGCTG
GCAGCGGCAC TGGATGCCTA CGAGCAGGCC CTGGACCGAC AACCCGACTT CCCTGCGGCG
CAAACCAATC GGGCACTGGT GCAAGGCCTG CTGGATCAGG CCGATGAGCA GAAGCCTGCC
CAGGATGAAC AGAACAAGGC CGATCAGGGC GAAGAAGGTC AACAGGCGTC GCAAGACCCC
AACAGCAGCG CATCACCCGC CGAGCAGAAC CCGTCCCGAT CGGATCAACC CGGCACCAGC
GAAAGCCTGC CGCCAGACAC CAGTGGTAAG GCCACCTCGG GCGAGTCGAC CGACGACGAA
CAGACCACCC GCCCGCCGCT ACAGTCCGCC GACAGCCCCA TGACCGGCGA GCGGCGTCAG
GAACTGGAGC AGTGGCTGAG GCAGATTCCG GATGATCCGG GCGAACTGTT GCGGCGCAAA
TTTCGCTACG AACAGCAACA TCAGGAAAAG ACCCGATGA
|
|---|
| Protein sequence | MISGLWPHWF RPEWLLITPL LALLIWRLWH RQKRAGRWQM LLPTHFHEVL LNGGRGSNSK
LPWIALGLAW LLALFALLGP SWQRVEQISQ KPVDPLVVIL ELTPQMLATD TPPTRLEQAR
RKLLDLLQKR SDAQTAIVVY AGSAHTLVPL SDDLVTSHNL LEAIRPSIMP VTGQRADLAV
QKALHLLKQG ALGQGRILLI TSSLSEQERQ GIRAALRGQS PPLLILGVGT AEGAPVTQEN
GSLLKDDQGA ILVPRLDSTS LNDFADQVGG SYRQARGDEE DLRSLGLLAS PRHMTRDGQV
VQLDTWADQG HWLLLPLLLI AALAGRRGWL FCLPLLFMFP QNSQAFEFQD LWLRPDQQGQ
RLLEQHRPAE AAQRFEDSRW KGVALYQAQD YASAARQFAE GNSAADHYNR GNALARSGEL
AAALDAYEQA LDRQPDFPAA QTNRALVQGL LDQADEQKPA QDEQNKADQG EEGQQASQDP
NSSASPAEQN PSRSDQPGTS ESLPPDTSGK ATSGESTDDE QTTRPPLQSA DSPMTGERRQ
ELEQWLRQIP DDPGELLRRK FRYEQQHQEK TR
|
|---|
| |