| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1709 |
|---|
| Symbol | |
|---|
| ID | 3367214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1934834 |
|---|
| End bp | 1936147 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637652055 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_234795 |
|---|
| Protein GI | 66044954 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.496395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG AACTGCGGCT TATACGCCGC ATCACGTTCA AACTGATTCC TTTCCTCATC
CTGCTGTACC TGATCGCTTA TGTAGACCGC TCTGCCGTGG GCTTTGCCAA GCTGCACATG
GGCGCGGACA TCGGTATCGG CGACGCCGCC TACGGGCTGG GTGCCGGGCT GTTCTTTATC
GGTTACTTCC TGCTGGAGAT CCCCAGCAAC CTGATGCTCG AGCGTTTCGG CGCACGTCGC
TGGTTCGCGC GGATCATGAT CACCTGGGGC GCGATCACCA TCGGCATGGC CTTCGTCCAG
GGGCCGCACA GCTTCTATGT GATGAGGTTT TTGCTGGGCG CTGCCGAGGC GGGCTTCTTT
CCCGGTGTGC TGTACTACAT CACCCAGTGG TTTCCGGTGC GCCATCGCGG CAAGATCCTT
GGCCTTTTCA TCCTCTCGCA ACCCATCGCC ATGATGATCA CCGGGCCCGT GTCCGGCGGT
TTGCTGGGCA TGGACGGCAT ACTCGGCCTG CATGGCTGGC AATGGCTGTT CATCGTCATC
GGCACGCCGG CGATTCTGCT GACCTGGCCG GTGCTGCGCT GGTTGCCGGA TGGTCCGCAG
CAGGTCAAAT GGATGGACCA GGCCGAGAAG GACTGGCTGA CCGGTGAGCT GAAAAAGGAC
CTTGAAGAGT ACGGCCAGAC TCGCCACGGC AATCCGTTGC ATGCCTTGAA AGACAAACGC
GTGCTGTTGC TGGCGCTGTT CTACCTGCCG GTGACCTTGA GCATCTACGG TCTGGGCCTG
TGGCTGCCGA CGCTGATCAA ACAGTTTGGC GGCAGTGACC TGACCACCGG CTTCGTGTCA
TCGGTGCCTT ACATTTTCGG CATCATCGGC CTGCTGATCG TGCCGCGCAG CTCTGACCGT
CTCAACGACC GTTACGGGCA TCTGGCCGTG CTTTATGTGC TGGGCGCCAT CGGCCTGTTC
TGCAGTGCCT GGCTGACCAT GCCGGTGGCG CAGCTGGCTG CATTGTGCGT CGTGGCGTTC
GCGCTGTTTT CCTGCACGGC GGTGTTCTGG ACCTTGCCGG GGCGGTTCTT CGCCGGTGCC
AGTGCCGCAG CCGGTATCGC GCTGATCAAT TCGGTCGGCA ATTTGGGCGG CTACATCGGT
CCGTTCGTGA TCGGCGCGTT GAAGGAAATC ACCGGCAGTC TGGCATCAGG CCTGTATTTC
CTGTCGGGCG TCATGGTCTT CGGGCTGCTG CTGACCGGCA TCGTTTATCA CGTGCTGGAG
CGCAAGCATG CGCTGCCAGC GTCCGACTTC GCGGCGAGTG CCAGGGCGAG ATAG
|
|---|
| Protein sequence | MSQELRLIRR ITFKLIPFLI LLYLIAYVDR SAVGFAKLHM GADIGIGDAA YGLGAGLFFI
GYFLLEIPSN LMLERFGARR WFARIMITWG AITIGMAFVQ GPHSFYVMRF LLGAAEAGFF
PGVLYYITQW FPVRHRGKIL GLFILSQPIA MMITGPVSGG LLGMDGILGL HGWQWLFIVI
GTPAILLTWP VLRWLPDGPQ QVKWMDQAEK DWLTGELKKD LEEYGQTRHG NPLHALKDKR
VLLLALFYLP VTLSIYGLGL WLPTLIKQFG GSDLTTGFVS SVPYIFGIIG LLIVPRSSDR
LNDRYGHLAV LYVLGAIGLF CSAWLTMPVA QLAALCVVAF ALFSCTAVFW TLPGRFFAGA
SAAAGIALIN SVGNLGGYIG PFVIGALKEI TGSLASGLYF LSGVMVFGLL LTGIVYHVLE
RKHALPASDF AASARAR
|
|---|
| |