Gene Psyr_1707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1707 
Symbol 
ID3367212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1932068 
End bp1932781 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content62% 
IMG OID637652053 
Producttranscriptional regulator GntR 
Protein accessionYP_234793 
Protein GI66044952 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0401914 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.758482 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTATC GAAAGCCTTC CGACCGAAAA AGCATGCACG CCCGTATTGT CCAGGAACTG 
GGCATGCAAA TCGTGTCCGG CCGTTTCAAG CCTGACGAAA AGCTGCCTGC CGAAGCGATG
CTCTGCGAAG AGTATGCCGT CAGCCGCCCG GTCCTGCGTG AAGCCACGCG GGTTCTGGTG
GCCAAGGGTC TGGTTTATTC GCGGCCGCGT GTCGGCACGG TGGTCAAGGC GCGTCGCGAA
TGGCATCTGC TGGACCCGGA CGTACTGCAC TGGGTCATGC AAAGCTCGCC GCAGAATGAT
TTCTTCAATC TGCTGACCAG CGTACGCGCT GTCATCGAAC CAGCAGTTGC AGCACTGGCC
GCGCAGCATG CCACCGACGC AGAGATCGAG TCGATCCACG AAGCCTACCT GCGCATGGAA
GCCGCACCGA CGCCGGAAGA CCTGCTGCAA CCCGATCTCG ACTTCCACAG CCGCATCGCC
GACGCCACCC ACAACGACTT GCTGGCTCAC CTGTGCAACA TGCTGTCACT GGCGTTGCGC
GAAGCGCTCA AATACTCCAA CAAGCGTCCC AACCTGCACG AACTGGCCAT GCCGCGTCAC
AAGGCGATCC TCACCGCCAT CCAGAACCGC GACGCGCTGG GCGCACGCCA CGCCTCGCTG
GTGCAACTGG ACGATGCACG CAACGCGCTG AGTGTGGTGC TCGGCGGAGG CTGA
 
Protein sequence
MDYRKPSDRK SMHARIVQEL GMQIVSGRFK PDEKLPAEAM LCEEYAVSRP VLREATRVLV 
AKGLVYSRPR VGTVVKARRE WHLLDPDVLH WVMQSSPQND FFNLLTSVRA VIEPAVAALA
AQHATDAEIE SIHEAYLRME AAPTPEDLLQ PDLDFHSRIA DATHNDLLAH LCNMLSLALR
EALKYSNKRP NLHELAMPRH KAILTAIQNR DALGARHASL VQLDDARNAL SVVLGGG