| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1684 |
|---|
| Symbol | |
|---|
| ID | 3367189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1892673 |
|---|
| End bp | 1893737 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637652030 |
|---|
| Product | GGDEF |
|---|
| Protein accession | YP_234770 |
|---|
| Protein GI | 66044929 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.419665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGTG ACATGCAGAC CCGGATAAAA CAACTGCTCT CACCCGCCAT TGCACGCGTG
CAATGTATTG CCATCGTTTG TTGGCTGGTT GTTCTGTCGG TTACGCCGTA TCTGCAATTC
GGTCTGCTGG AAGTGCTACT GACCCTTGGC CTGCTGGGCG CGTGCGCCTG GCAATGCCGC
GCGGTCGACT TCAGAGTCTG GCGATGTATG GGCATGGCCT TCGTGATCAT TGTGGCACTG
TGCTTTTCAA GGGCGGGCCA TTTACGCACC GCGACGGACA TCAACTGGTC ACTCTCGGTC
GCCGTAATGA TTATTCTGTG TTCGACATTG TTAGTGGTGT ATACCCGGGA TTATCTGCTG
GTGGCGGTAC TCGCCTGGTG TATTCTCTCT CCCGCTCAGG GGGTCGATAC CGACAGTGTC
GCGACGCTGT TCATGACACT GTTCTTTATC ACGTCGGTCA GTCTGGGCAG TGTGCTGAAT
CATACTTACA CGCGCACACT TCGTACGGTA TTGAGTCTGG AACATCAGTT TCGCGAATTG
TCGATGACCG ATGACCTGAC CGCCATATTG AATCGCCGGG CACTGATGCA GGCACTGGAT
AATCATGTGC TGAATAACTC CGCGGGTTAT TTTCTGATGC TCGACATTGA TGACTTCAAA
ACCATCAATG ATCAATTCGG CCACGACGCC GGTGATCAGG CGCTTCGGGT GATGGCTGGC
TGCCTGCAAA AGACCGTGGG CAGTCTCGCC TTCGGACGCA TGGGCGGAGA GGAGTTCGGC
GTGATCCTGC CAATGTGCAG TGAAGACGAC GCTCGGGATT ATGTGCTGGA CCTGTTGGAG
TGCATCAGAA AATCCCTCGC TGTCAGCCCG CTGACCTGCA GTGCCGGGCT GGCCGACATC
CCTGCGGCAG CGGACAGCTC GGCAGTGCTC AAGACCGCCG ACATCAATTT GTATAAGGCC
AAGCGGGGCG GCAAGGACCG GGCATTCTGG CGAGGTGCGC AGATAGGCGG CCAGCAGGCG
CACGGGAGTG TGGAATGCGA CAAAACCCGC GCCCTGACAC GATAG
|
|---|
| Protein sequence | MNGDMQTRIK QLLSPAIARV QCIAIVCWLV VLSVTPYLQF GLLEVLLTLG LLGACAWQCR
AVDFRVWRCM GMAFVIIVAL CFSRAGHLRT ATDINWSLSV AVMIILCSTL LVVYTRDYLL
VAVLAWCILS PAQGVDTDSV ATLFMTLFFI TSVSLGSVLN HTYTRTLRTV LSLEHQFREL
SMTDDLTAIL NRRALMQALD NHVLNNSAGY FLMLDIDDFK TINDQFGHDA GDQALRVMAG
CLQKTVGSLA FGRMGGEEFG VILPMCSEDD ARDYVLDLLE CIRKSLAVSP LTCSAGLADI
PAAADSSAVL KTADINLYKA KRGGKDRAFW RGAQIGGQQA HGSVECDKTR ALTR
|
|---|
| |