Gene Psyr_1672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1672 
Symbol 
ID3367177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1877991 
End bp1879526 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content64% 
IMG OID637652018 
Productthreonine dehydratase 
Protein accessionYP_234758 
Protein GI66044917 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1171] Threonine dehydratase 
TIGRFAM ID[TIGR01124] threonine ammonia-lyase, biosynthetic, long form 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGG ACCCGCACGC TCTGCTCAAC TATTACGCGC GCAAAATCCT CACCTCGCGC 
GTCTACGACG TTGCCATCGA AACGCCGCTG CAAGGCGCTC GCCAGCTGTC CGAACGGCTG
GGCAATCAGG TGCTGCTCAA GCGCGAAGAC CTGCAGCCGG TGTTCTCGTT CAAGATTCGC
GGTGCGTACA ACAAGCTCGC GCAACTGCCC GCAGAGCAGA CCGCACGGGG CGTGGTGACG
GCCTCGGCAG GCAATCATGC CCAGGGCCTG GCGCTGGCAG CGCGTGAGCT GGGGATCAAG
GCGACCATCG TCATGCCGCG CACCACTCCG GAGATCAAGG TCGAAGGCGT GCGCTCGCGG
GGAGCCACCG TGGTGCTGCA TGGCGATTCG TTCCCGGAAG CGCTGGCCTA CTCGCTGAAG
CTGGTCGACG AACAAGGTTT CGTCTACATC CATCCGTATG ACGACCCCGA CACCATCGCC
GGGCAAGGCA CTGTGGCGAT GGAGATCCTT CGCCAGCAAC CGGGCCAGCT GGATGCGATC
TTTGTTCCGG TCGGGGGTGG CGGTCTGATT GCTGGTATCG CGGCCTACGT GAAATACCTG
CGCCCGGAGA TCAAGGTGAT CGGCGTCGAG CCGGACGATT CCAACTGCCT GCAGGCGGCG
ATGGCCGCCG GGGAGCGCGT GGTGTTGAGC CAGGTCGGGC TGTTTGCCGA TGGCGTGGCG
GTCGCGCAGA TCGGCCATCA CACCTTTGAA GTGTGCCGCC ATTATGTCGA TGAAGTGATC
ACCGTCAGCA CGGATGAGAT CTGTGCGGCG ATCAAGGACA TCTACGATGA CACCCGCTCG
ATCACCGAGC CCTCCGGCGC GTTGGGCGTG GCCGGGATCA AGAAGTATGT CGAGCAGCGC
GGCGTCAGCG GCCAGACGCT GGTGGCGATT GATTCAGGGG CCAACGTCAA CTTCGATCGC
TTGCGGCACG TGGCCGAGCG CGCCGAACTG GGCGAAGGCC GCGAGGCGAT CATTGCCGTG
ACCATCCCCG AGCAACCGGG CAGCTTCAAG GCGTTCTGCG AGGCCATCGG CAAGCGGCAG
ATCACCGAAT TCAACTACCG CTATCACACC GACCGCGAGG CGCACATCTT CGTCGGCGTG
CAGACCCATC CCGAGAACGA CCCACGCAGC GCCCTGATCG CCAGCCTGAC CGGGCAAGGC
TTCCCGGTGC TGGACCTGAC AGACAACGAA CTGGCCAAAC TGCACATCCG CCACATGGTC
GGCGGGCATG CCGAGCGGGT CGACGATGAA GTGGTGCTGC GCTTCGAGTT CCCGGAGCGA
CCGGGCGCGC TGTTCAACTT CCTCAACCGC CTGGGCGGGC GCTGGACCAT CTCCATGTTC
CACTACCGCA ACCACGGCGC AGCCGATGGC CGAGTGGTTG CCGGGCTGGT GGTGCCGGAG
GAAGAGCGGC ATCTGGTCGG TGCTGCGCTG GATGAGATTG GTTACCGGTA CTGGGATGAA
AGCGAGAACC CGGCTTACCG GTTGTTTCTG GGCTGA
 
Protein sequence
MSQDPHALLN YYARKILTSR VYDVAIETPL QGARQLSERL GNQVLLKRED LQPVFSFKIR 
GAYNKLAQLP AEQTARGVVT ASAGNHAQGL ALAARELGIK ATIVMPRTTP EIKVEGVRSR
GATVVLHGDS FPEALAYSLK LVDEQGFVYI HPYDDPDTIA GQGTVAMEIL RQQPGQLDAI
FVPVGGGGLI AGIAAYVKYL RPEIKVIGVE PDDSNCLQAA MAAGERVVLS QVGLFADGVA
VAQIGHHTFE VCRHYVDEVI TVSTDEICAA IKDIYDDTRS ITEPSGALGV AGIKKYVEQR
GVSGQTLVAI DSGANVNFDR LRHVAERAEL GEGREAIIAV TIPEQPGSFK AFCEAIGKRQ
ITEFNYRYHT DREAHIFVGV QTHPENDPRS ALIASLTGQG FPVLDLTDNE LAKLHIRHMV
GGHAERVDDE VVLRFEFPER PGALFNFLNR LGGRWTISMF HYRNHGAADG RVVAGLVVPE
EERHLVGAAL DEIGYRYWDE SENPAYRLFL G