| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1649 |
|---|
| Symbol | |
|---|
| ID | 3367151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1853805 |
|---|
| End bp | 1855049 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637651992 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase II |
|---|
| Protein accession | YP_234735 |
|---|
| Protein GI | 66044894 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000779788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.53214 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGCGTA GACGCGTCGT GGTCACCGGG ATGGGCATGC TTTCGCCACT GGGCAATGAC
GTGCCCAGCA GTTGGCAAGG CATTCTGGCG GGCCGCAGTG GCATTGGCCT TATCGAGCAC
ACGGACTTGT CAGCCTTCAC CACCCGCTTC GGCGGCTCGG TCAAGGGTTT CAACGTCGAA
GAATACCTCG CGCCCAAAGA AGCGCGCCGC CTCGATCTCT TTATTCAGTA TGGCCTTGCG
GCCAGCTTTC AGGCCGTGCG TAATGCAGGC CTCGAAGTCA CTGATGCAAA CCGTGAGCGC
ATCGGCGTTG CCATGGGGTC GGGCATCGGT GGTCTGACCA ATATCGAAAA CAGCAGTCGT
CTGCTGCACG AGCAGGGTCC TGGACGGATT TCGCCGTTCT TCGTTCCTGG CTCGATCATC
AATATGATTT CCGGTTTCCT GTCGATCCAC CTGGGCGCAC AGGGACCCAA TTACTCCATC
GCGACGGCTT GCACGACTGC AACCCACTGC ATCGGCATGG CGGCTCGCAA CATCGCCTAT
GACGAAGCGG ACGTGATGAT CGCCGGTGGC GCTGAAATGG CCGCCTGTGG ACTCGGTCTG
GGCGGCTTCG GTGCAGCGCG TGCGCTGTCG ACCCGCAACG ATGACCCGAC CCGCGCCAGT
CGCCCCTGGG ACAAGGGCCG TGATGGCTTT GTCCTGTCCG ACGGTGCCGG TGCCATGGTG
CTCGAAGAGC TTGAGCACGC CAAGGCGCGT GGCGCGACCA TTTATGCAGA GCTGGTCGGG
TTCGGCATGA GCGGCGACGC TTATCACATG ACTTCGCCAC CTGATGACGG CGCCGGTGCT
GCACGCTGCA TCGTCAATGC GTTGCGTGAT GCCAAGGTCA ATCCCGATCA GGTGCAGTAC
ATCAACGCAC ACGGTACGTC GACGCCTGCA GGCGATCTGG CCGAAGCTTC TGCGATCAAG
TCGGTATTCG GTGATCACGC CTACAAGCTG GCAGTCAGTT CGACCAAGTC GATGACCGGC
CACCTGCTGG GCGCCGCCGG TGCTGTCGAA GCGATCTTCA GCGTCCTGGC AATGGTTGAT
CAGGTGGCTC CGCCGACCAT CAACCTGGAT GAGCCAAGCG AAGGCTGCGA TCTGGACTTC
GTGCCTCACG AAGCGCGCCG CATGCCGATC GACGTCGTTC TGTCGAACTC CTTCGGCTTT
GGTGGCACCA ACGGCTCGCT GGTATTCCGT CGGTTCGCCG AGTAA
|
|---|
| Protein sequence | MSRRRVVVTG MGMLSPLGND VPSSWQGILA GRSGIGLIEH TDLSAFTTRF GGSVKGFNVE
EYLAPKEARR LDLFIQYGLA ASFQAVRNAG LEVTDANRER IGVAMGSGIG GLTNIENSSR
LLHEQGPGRI SPFFVPGSII NMISGFLSIH LGAQGPNYSI ATACTTATHC IGMAARNIAY
DEADVMIAGG AEMAACGLGL GGFGAARALS TRNDDPTRAS RPWDKGRDGF VLSDGAGAMV
LEELEHAKAR GATIYAELVG FGMSGDAYHM TSPPDDGAGA ARCIVNALRD AKVNPDQVQY
INAHGTSTPA GDLAEASAIK SVFGDHAYKL AVSSTKSMTG HLLGAAGAVE AIFSVLAMVD
QVAPPTINLD EPSEGCDLDF VPHEARRMPI DVVLSNSFGF GGTNGSLVFR RFAE
|
|---|
| |