Gene Psyr_1621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1621 
Symbol 
ID3367123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1822731 
End bp1823411 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content59% 
IMG OID637651964 
Productautoinducer synthesis protein 
Protein accessionYP_234707 
Protein GI66044866 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms 
COG ID[COG3916] N-acyl-L-homoserine lactone synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.672835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.82105 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAGCG GGTTTGAATT TCAGGTAGCC AGTTACAGCA AAGTGCCCGT CACGTTGCTG 
GAAACGCTGT ATGCCCTGCG CAAGAAGATC TTTTCGGATC GGCTTGAATG GAAGGTTCGC
GTCAGTCAGG CGTTCGAGTT CGATGACTAT GACAGTGCCG CTGCGACTTA CCTGATAGGC
AGCTGGAACG GGGTTCCGCT GGCCGGGCTC AGGCTGATCA ACACCTGTGA TCCGTACATG
CTGGATGGAC CGTTTCGCAG TTTTTTCGAC TATCCGGCGC CCAGAAATGC TGGCATGGCG
GAGTCGAGCC GGTTCTTTGT CGACACGGAA CGTGCCCGGT CGCTGGGTAT TCTGCACGCG
CCACTGACCG AAATGCTGCT GTTCTCGATG CACAATCACG CTGCCTCGGC TGGTCTGGAG
TCCATCATCA CGGTGGTCAG CAAGGCGATG GCGCGGATCG TGCGCAAGTC CGGGTGGGAG
CACCGTGTTC TGGCAACGGG GGAGGCTTCA CCAGGCGAGA CGGTATTGTT GCTGGATATG
CCTGTGAACG CCGACAACCA TCAACGGCTG CTCGGCAGCA TTGCTCTCAG GCAGCCCGTC
ACGGATGACC TGTTGCGCTG GCCAATACCG CTCGATGCAT CAGCATCCTT GCAGCGAGCA
CGCATGGACA GCGCAGCCTG A
 
Protein sequence
MSSGFEFQVA SYSKVPVTLL ETLYALRKKI FSDRLEWKVR VSQAFEFDDY DSAAATYLIG 
SWNGVPLAGL RLINTCDPYM LDGPFRSFFD YPAPRNAGMA ESSRFFVDTE RARSLGILHA
PLTEMLLFSM HNHAASAGLE SIITVVSKAM ARIVRKSGWE HRVLATGEAS PGETVLLLDM
PVNADNHQRL LGSIALRQPV TDDLLRWPIP LDASASLQRA RMDSAA