Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1621 |
Symbol | |
ID | 3367123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1822731 |
End bp | 1823411 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637651964 |
Product | autoinducer synthesis protein |
Protein accession | YP_234707 |
Protein GI | 66044866 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism [T] Signal transduction mechanisms |
COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.672835 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.82105 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAGCG GGTTTGAATT TCAGGTAGCC AGTTACAGCA AAGTGCCCGT CACGTTGCTG GAAACGCTGT ATGCCCTGCG CAAGAAGATC TTTTCGGATC GGCTTGAATG GAAGGTTCGC GTCAGTCAGG CGTTCGAGTT CGATGACTAT GACAGTGCCG CTGCGACTTA CCTGATAGGC AGCTGGAACG GGGTTCCGCT GGCCGGGCTC AGGCTGATCA ACACCTGTGA TCCGTACATG CTGGATGGAC CGTTTCGCAG TTTTTTCGAC TATCCGGCGC CCAGAAATGC TGGCATGGCG GAGTCGAGCC GGTTCTTTGT CGACACGGAA CGTGCCCGGT CGCTGGGTAT TCTGCACGCG CCACTGACCG AAATGCTGCT GTTCTCGATG CACAATCACG CTGCCTCGGC TGGTCTGGAG TCCATCATCA CGGTGGTCAG CAAGGCGATG GCGCGGATCG TGCGCAAGTC CGGGTGGGAG CACCGTGTTC TGGCAACGGG GGAGGCTTCA CCAGGCGAGA CGGTATTGTT GCTGGATATG CCTGTGAACG CCGACAACCA TCAACGGCTG CTCGGCAGCA TTGCTCTCAG GCAGCCCGTC ACGGATGACC TGTTGCGCTG GCCAATACCG CTCGATGCAT CAGCATCCTT GCAGCGAGCA CGCATGGACA GCGCAGCCTG A
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Protein sequence | MSSGFEFQVA SYSKVPVTLL ETLYALRKKI FSDRLEWKVR VSQAFEFDDY DSAAATYLIG SWNGVPLAGL RLINTCDPYM LDGPFRSFFD YPAPRNAGMA ESSRFFVDTE RARSLGILHA PLTEMLLFSM HNHAASAGLE SIITVVSKAM ARIVRKSGWE HRVLATGEAS PGETVLLLDM PVNADNHQRL LGSIALRQPV TDDLLRWPIP LDASASLQRA RMDSAA
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