| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1599 |
|---|
| Symbol | |
|---|
| ID | 3367101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1797634 |
|---|
| End bp | 1799748 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637651942 |
|---|
| Product | peptidase S41A, C-terminal protease |
|---|
| Protein accession | YP_234685 |
|---|
| Protein GI | 66044844 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0464892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTATC AATTGTCCTC GCGTCGAATC AGCATGAAGC AACTATTCCC CAGCACTGCC
CTCGCACTGT TTGTCGGCCT TAGCGTTTTG CCGATGTCAG CCAGTACCTT TGCCGCCAAC
AGCTGGGATA ATCTTCAGCC GGACCGCGAC GAAGTGATTG CCAGTCTCAA CGTGGTTGAG
CTGCTCAAAC GACATCACTA CAGCAAGCCG CCCCTGGACG ACAAGCGTTC AGCGATTATT
TACCAGAGCT ACATCAAGCA ACTGGACCCC TCGCGCAGCT ACTTCATGGC CAGCGACATT
GCCGAGTTCG ACAAATGGCA GTTCCAGTTC GACGACTTCC TGAAGAGTGG CGACCTGAAC
GCCGGCTTCA TCATCTACAA GCGCTATCTG GACCGCGTCA ACGCGCGTCT GAACTTCGCG
CTGGGCGAGT TGGGCAAGGG CGTCGACAAG CTCGACTTCA ATACCAAGGA AACCCTGCTG
GTCGACCGCA AGGACGCCGC ATGGCCCAAG GATACCGCCG AGCTCGACGA ACTGTGGCGC
AAGCGCATCA AGGATGAAGT CCTGCGGTTG AAGATTGCAG GTAAGGATCC GGCGAAGATT
CAGGAAACCC TGACCAAGCG CTATAAGAAT CAGCAGGCGC GTCTGAATCA GACTCGCGCC
GAAGATATCT TCCAGGCCTA CATCAACACG TTCGCCATGT CCTACGATCC GCACACCAAC
TACCTGTCAC CTGACAGCGC GGAGAACTTC GACATCAACA TGAGCCTGTC GCTGGAAGGC
ATCGGCGCCG TGTTGCAGAG CGATAATGAC AACGTGAAGA TCGTGCGTCT GGTGCCGGCA
GGTCCGGCGG CCAAGACCAA GCAGGTTGCC CCGGCCGACA AGATCGTGGC CGTCGCTCAG
GGCGACAAGG AAATGGTCGA CGTGATCGGC TGGCGTCTGG ATGAAGTGGT CAAGCTGATC
CGCGGTCCGA AAGGCTCGGT GGTACGCCTG GAGATCATCC CGGCCAGCAA TGCGCCGAAC
GACCAGACCA CCAAGATCGT CGCCATCACC CGTGAAGCGG TGAAACTTGA AGAGCAGGCG
GCCAAGAAGT CGATCCTGCA CCTCAAGCAG GACGGCAAGG ATTACAAGCT CGGGGTCATC
GACATTCCGG CCTTCTATCT GGACTTCAAG GCCTACCGTG CCGGCGATCC GGAATACAAG
AGCACCACCC GTGACGTGAA GAAACTGCTC ACCGAATTGC AGGCCGAGAA GGTCGACGGT
GTGGTACTGG ATCTGCGCAA CAATGGTGGC GGTTCATTGC AGGAAGCCAC CGAGCTGACC
AGCCTGTTCA TCGACAAAGG CCCGACCGTG CTGGTGCGCA ATGCCGACGG CAAGGTCGAC
GTGCTGGAAG ACGAAGCCAA GGGCGCGTTC TACAAAGGCC CGATGGCACT GCTGGTCAAC
CGTCTGTCTG CGTCGGCGTC GGAGATTTTC GCCGGGGCGA TGCAGGATTA TCACCGCGCG
CTGGTGATCG GTGGTCAGAC CTTCGGTAAA GGCACCGTGC AGACCATTCA GCCGCTCAAT
CACGGCGAAC TGAAACTGAC CCTGGCCAAG TTCTACCGGG TTTCCGGTCA GAGCACCCAG
CATCAGGGCG TAGTACCGGA CATCACTTAC CCGTCGCTGA TCGACACCAA GGAAATCGGC
GAGAGCGCGC TGCCCGAGGC CATGCCGTGG GACAGCATCA AACCGGCGAT CAAGCCGGCG
ATCGACCCGT TCAGGCCGTT CTTGGCCCAA CTGCAGGCGC GTCACGAGGC ACGTTCGGCA
AAAGACGCCG AGTTCGTGTT CATCGAGGAT CGCCTGGCGC TGGCCAAGAA GCTGATGAAC
GAGAAGACCG TCAGCCTCAA TGAAGCCGAC CGTCGTGCCG AGCATGCGTC TATCGAAAGC
AAGCAACTTG CGCTGGAAAA CACCCGCCGC AAGGCCAAGG GTGAAGAACC GCTCAAAGAG
CTGAAGAAGG AAGACGAAGA CGCGCTGCCG GTGGAAGACG AGAAAACCAA ACCCGAGGAC
GATGCCTATC TGGCAGAGAC CGGGCGCATT CTCATCGACT ACCTGGGTCT GAGTGCCGCT
GTCGCGAAAA AGTAA
|
|---|
| Protein sequence | MRYQLSSRRI SMKQLFPSTA LALFVGLSVL PMSASTFAAN SWDNLQPDRD EVIASLNVVE
LLKRHHYSKP PLDDKRSAII YQSYIKQLDP SRSYFMASDI AEFDKWQFQF DDFLKSGDLN
AGFIIYKRYL DRVNARLNFA LGELGKGVDK LDFNTKETLL VDRKDAAWPK DTAELDELWR
KRIKDEVLRL KIAGKDPAKI QETLTKRYKN QQARLNQTRA EDIFQAYINT FAMSYDPHTN
YLSPDSAENF DINMSLSLEG IGAVLQSDND NVKIVRLVPA GPAAKTKQVA PADKIVAVAQ
GDKEMVDVIG WRLDEVVKLI RGPKGSVVRL EIIPASNAPN DQTTKIVAIT REAVKLEEQA
AKKSILHLKQ DGKDYKLGVI DIPAFYLDFK AYRAGDPEYK STTRDVKKLL TELQAEKVDG
VVLDLRNNGG GSLQEATELT SLFIDKGPTV LVRNADGKVD VLEDEAKGAF YKGPMALLVN
RLSASASEIF AGAMQDYHRA LVIGGQTFGK GTVQTIQPLN HGELKLTLAK FYRVSGQSTQ
HQGVVPDITY PSLIDTKEIG ESALPEAMPW DSIKPAIKPA IDPFRPFLAQ LQARHEARSA
KDAEFVFIED RLALAKKLMN EKTVSLNEAD RRAEHASIES KQLALENTRR KAKGEEPLKE
LKKEDEDALP VEDEKTKPED DAYLAETGRI LIDYLGLSAA VAKK
|
|---|
| |