| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1574 |
|---|
| Symbol | |
|---|
| ID | 3367074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1768583 |
|---|
| End bp | 1770643 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637651915 |
|---|
| Product | oligopeptidase B |
|---|
| Protein accession | YP_234660 |
|---|
| Protein GI | 66044819 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1770] Protease II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0149032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTCC CGAATGCAAC CTCCAGCGCC CCGATCGCTC GCAAGGCCGA CGGTTCCGAC
CCCTACGCCT GGCTGCAGAA CCGCGACACC GACGAAGTGC TCGACTACCT CAAAGCCGAA
AACGCCTGGC AGGAGCAGCA ACTGGCAGAG CAGACCGGGT TGCGCGAAAG CCTGTTCGAG
GAAATCAAGG GCCGCATCCT CGAAACCGAC CTGTCGCTGC CCTCCCCCTG GGGCCCTTAC
CTTTATTACA CCCGCACCAC ACAAGGCGAT GAATACGCCC GGCACTACCG CTGCCCGCGC
CCGGCCGACG ACAGCAACAC AGTGGACGAA AGCGCTGAGG AATTGTTGCT CGACCCTAAC
GAGATGGCCG ATGGCGGCTT TTTCTCGCTG GGCGCGTTCA GCATCAGTCC CGACCACCAG
CGCCTGGCCT ACAGCCTGGA CACCAGTGGC GACGAGGTGT ACGCGCTTTA CGTCAAGGAG
CTGAGCACCG GCCAGATCAG CAGCCTGCCC TTTGAAAACT GCGACGGCAG CATGACCTGG
GCCAACGACA GCCAGACCCT GTTTTTCGGC GAGCTGGACG AAACCCATCG CCCGGGCAGG
CTGCATCGCC ATACCCTGGG CACGGCATCA GCCGAGCTGG TGTTCGACGA GCCGGACGGC
CGCTTCTTCC TGCACTGTTT CCGCAGCAGC TCCGAGCGCC AACTGATCAT TCTGCTCAAC
AGCAAAACCA CTAGCGAAGC CTGGGTGCTG GACGCCGATC ATCCACAACA GGCCTTCACC
TGCCTCGCAC CGCGCAGCGA AGGTCACGAA TATTACCCGG ACCACGGGCT GCTCGACGGC
GTCTGGACCT GGTTCATCCG CAGCAATCAG AGCGGCATCA ACTTCGCGCT GTATCAGGCT
GCGCAACAGG ACAGTGGCGT ACCGGTGCGC GAGGACTGGC AGACGCTGGT CGCGCACAAC
GACAAGGTCA TGCTCGAAGG CGTCAGCCTC AACGCCAAAG GCATCAGCCT GAGCCTGCGC
GAGGGCGGCC TGCCGATCAT CGAAGTACGT CCGCAAGCGC TGCCGACCTA TCGCGTGCAG
CTGCCTGACG CCGCCTACAG CCTGTATGTG CAGGACACGC TGGAATTCGA CAGCGACAAA
ATCCGCCTGC GCTACCAGTC GCTGAACCGT CCGGCCCAGG TCCGTCAACT GACCCTGGCC
AGCGGCGAGC AAGTGGTGCT CAAGGAAACG CCGGTACTGG GCACCTTCGA CGCCGATGCC
TACGTCAGCC AGCGTTTGTG GGCCACGGCC AGCGATGGCA CCCAGGTGCC GATCAGCCTG
GTGGTCAAGC GCGAACTGGC CGGACAGGCC ACCCCGCTGT ACCTGTACGG CTACGGCGCC
TACGGCGAGA GCCTCGACCC GTGGTTTTCC CACGCGCGCC TGAGCCTGCT CGACCGTGGC
GTGGCGTTCG CCATCGCCCA TGTGCGCGGC GGCGGCGAGC TGGGCGAGGC CTGGTATCGC
AACGGCAAGC AGGAGCACAA ACAGAACACT TTCGGCGATT TCATTGCCTG CGCCGAACAC
CTTGTTGCCC AGGGCCTGAC CAGCGCCGGA CAACTGGTGA TCAGCGGTGG CAGCGCCGGT
GGCCTGCTGA TCGGTGCGGT GCTCAACCAA CGGCCCGAGC TGTTCAAGGC AGCGATTGCC
GAAGTGCCGT TCGTCGATGT ACTGAACACC ATGCTCGACC CGGACCTGCC GCTGACCGTC
ACCGAATACG ACGAATGGGG CAACCCGCAG GAGCCGGAGG TCTACGCGCG TATCAAGGCC
TACGCGCCCT ACGAAAACGT CACGGCTCAG GCCTATCCGG CCATGCTGGT CATCGCCGGT
TACAACGACA GCCGTGTGCA GTATTGGGAA GCCGCCAAAT GGGTGGCTAA ATTGCGCGCC
ACCAAGACCG ACGATAATCC GTTGCTGCTC AAGACCGAAC TGGGCGCCGG GCACGGTGGC
ATGAGCGGTC GCTATCAGGG CTTGCGTGAC GTGGCGCTGG AGTACGCATT TATCTTCAAG
GTATTGCAGA TCGCTGAATG A
|
|---|
| Protein sequence | MSFPNATSSA PIARKADGSD PYAWLQNRDT DEVLDYLKAE NAWQEQQLAE QTGLRESLFE
EIKGRILETD LSLPSPWGPY LYYTRTTQGD EYARHYRCPR PADDSNTVDE SAEELLLDPN
EMADGGFFSL GAFSISPDHQ RLAYSLDTSG DEVYALYVKE LSTGQISSLP FENCDGSMTW
ANDSQTLFFG ELDETHRPGR LHRHTLGTAS AELVFDEPDG RFFLHCFRSS SERQLIILLN
SKTTSEAWVL DADHPQQAFT CLAPRSEGHE YYPDHGLLDG VWTWFIRSNQ SGINFALYQA
AQQDSGVPVR EDWQTLVAHN DKVMLEGVSL NAKGISLSLR EGGLPIIEVR PQALPTYRVQ
LPDAAYSLYV QDTLEFDSDK IRLRYQSLNR PAQVRQLTLA SGEQVVLKET PVLGTFDADA
YVSQRLWATA SDGTQVPISL VVKRELAGQA TPLYLYGYGA YGESLDPWFS HARLSLLDRG
VAFAIAHVRG GGELGEAWYR NGKQEHKQNT FGDFIACAEH LVAQGLTSAG QLVISGGSAG
GLLIGAVLNQ RPELFKAAIA EVPFVDVLNT MLDPDLPLTV TEYDEWGNPQ EPEVYARIKA
YAPYENVTAQ AYPAMLVIAG YNDSRVQYWE AAKWVAKLRA TKTDDNPLLL KTELGAGHGG
MSGRYQGLRD VALEYAFIFK VLQIAE
|
|---|
| |