| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1565 |
|---|
| Symbol | |
|---|
| ID | 3367065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1761509 |
|---|
| End bp | 1762441 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637651906 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_234651 |
|---|
| Protein GI | 66044810 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00533896 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTC TGATTGCCGA GCACGATTAC CACGTTTACA CCCAATTGTT GCGCAAGGCT
GCGCCTGATC TGGAAGTTTT CAGCACTGGC GATTCTGCCG AATTGTCGCG CATGGCCAGC
GACTGCCCGG TCTGGCTGGG GCAGCCGGAC CTGATGGCCA ACCTGTTGCG GCAGGGGCAC
AAGCCGCAAT GGCTGCAATC CACCTGGGCG GGCATCACAC CGCTGCTGGC CGACAGCCTG
TCGCGCGACT ATCGCCTGAC CCGTGCGGTC GGGATTTTCG GGCAGGTCAT GGCCGAATTC
GTTTTGACCT ACATGCTTGG CCATGAGCGC GAGGTGCTGG CGCGCCTGAT GAGCCAGGTC
GAGCGCAAGT GGGACAACCG CACCGGGCAG AGCCTGTCGG GCCGCAAGGC ATTGATCGTC
GGTGCCGGTG ATATCGGTCA GCGCGTTGCC GAGTTCCTCC TGCCGTTCGG CGTGCAGGTG
TACGGTGTGG CTTCCAGTGC GCGCACTCAG GAACCGTTCA TCGAAGTGAC GGCGTTGTCA
GACATGACGC GTCTGCTCGG CGAGATGGAT TACGTCATCA ACCTGCTGCC CAACACGCCC
GAGACGCACG ACCTGTACGA CGCGAAGCTG TTCGCCGGCT TCAAGCCCTC GGCGCTGTTC
ATCAACGTCG GACGCGGGGT GGCGGTCGTC GACGCAGATC TGGTCGAGGC GTTGAAGGAA
GGGCATCTGG CTGGCGCGGT GATTGACGTC TGCCGTCAGG AGCCTTTGCC GCAGCGGCAT
CCGTTCTGGA CTGCCTACGG TCTGCTGTTG ACCGGTCACA GCTCGGCGCC TACCTCACCT
GTGGCCATGA CCGAGCTTTT CGTGCATAAC CTGAACGCTT TTCAGGCCGG AGAAACGCTG
CGCGGCGAGG TCGATTTTTC GCGAGGTTAC TGA
|
|---|
| Protein sequence | MRVLIAEHDY HVYTQLLRKA APDLEVFSTG DSAELSRMAS DCPVWLGQPD LMANLLRQGH
KPQWLQSTWA GITPLLADSL SRDYRLTRAV GIFGQVMAEF VLTYMLGHER EVLARLMSQV
ERKWDNRTGQ SLSGRKALIV GAGDIGQRVA EFLLPFGVQV YGVASSARTQ EPFIEVTALS
DMTRLLGEMD YVINLLPNTP ETHDLYDAKL FAGFKPSALF INVGRGVAVV DADLVEALKE
GHLAGAVIDV CRQEPLPQRH PFWTAYGLLL TGHSSAPTSP VAMTELFVHN LNAFQAGETL
RGEVDFSRGY
|
|---|
| |