Gene Psyr_1563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1563 
Symbol 
ID3367063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1760015 
End bp1761148 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content64% 
IMG OID637651904 
Productribonuclease D 
Protein accessionYP_234649 
Protein GI66044808 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.459041 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00529979 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCCATCG ATATTCACTG GATTCGCGAC GACGACAGCC TCGCCCGGCA TTGCGCACAA 
TGGCAGTCAC TGCCTTTCGT GGCGCTCGAC ACCGAGTTCA TGCGGGTCGA CACTTTTTAT
CCGATCGCCG CGCTGCTGCA GATCGGCGAC GGGCAGAGCG CCTGGCTGAT TGATCCGTTG
CTGATCAACG ACTGGCGGCC GCTGTCTGCG TTGCTCGAAA ACCCCGACGT CATCAAAGTG
GTGCATGCGT GCAGCGAAGA CCTCGAGGTG TTGCTGCGCC TGACCGGCAG CCTGCCGGTT
CCGCTGTTCG ATACCCAGTT GGCAGCCGCC TACCTGAACC TCGGTTTTTC CATGGGCTAC
TCGCGCCTGG TGCAGGAGGT CCTCGACATC GACCTGCCCA AGGGCGAAAC CCGTTCCGAC
TGGCTGCAAC GCCCGTTGTC GGAAACGCAG GTCAGCTACG CTGCCGAAGA CGCCGTGCAC
CTGGCCGAGC TATTCACCAT CCTGCGCCCG CGCTTGTCCG ACGACAAATA TGCCTGGCTG
CTGGATGACG GTGCCGAACT GGTCGCCAAC CTGCGCCGTG AGGTGGACCC GTACGAGGTG
TATCGCGACG CCAAGCTGGC CTGGAAGCTG TCCCGCGCCC AGCTGGCGGT GCTGCGCGAG
TTGTGTGCCT GGCGTGAGCG TGAGGCGCGC GCCCGTAATC TGCCGCGCAA CCGTATCGTG
CGTGAGCACT CGCTCTGGCC ATTGGCCAAG ACCCAGCCGG ACAACCTCGG CGCGCTGGCG
CGGATCGAGG ACATGCACCC GCGTACGGTC CGTCATGACG GCGAGTTTCT GCTCGAGCTG
ATCAAGACCG CGAGCGTGCT GCCTCCCGAA GAGTGGCCAC CTGCGTTGCC CGAGCCATTG
CCCATCGATG CGGCCGGGTC GATCAAGCGT CTGCGTGCAA TCGGCCAGCA ATACGCCGAG
CAACTGGACA TGGCGCCGGA GCTGATGCTG CGCAAGAAGA CCCTCGAAGC CCTGCTCAAG
AGCGGCTACC CCGACGGTCC TTACCAATTG CCCGACTCGC TGCGTGGCTG GCGTCGCGAG
TTGATGGGTC AGGCGCTGCT GGACAGCCTG GCCGCCCCCG GAGAACCGTC TTGA
 
Protein sequence
MAIDIHWIRD DDSLARHCAQ WQSLPFVALD TEFMRVDTFY PIAALLQIGD GQSAWLIDPL 
LINDWRPLSA LLENPDVIKV VHACSEDLEV LLRLTGSLPV PLFDTQLAAA YLNLGFSMGY
SRLVQEVLDI DLPKGETRSD WLQRPLSETQ VSYAAEDAVH LAELFTILRP RLSDDKYAWL
LDDGAELVAN LRREVDPYEV YRDAKLAWKL SRAQLAVLRE LCAWREREAR ARNLPRNRIV
REHSLWPLAK TQPDNLGALA RIEDMHPRTV RHDGEFLLEL IKTASVLPPE EWPPALPEPL
PIDAAGSIKR LRAIGQQYAE QLDMAPELML RKKTLEALLK SGYPDGPYQL PDSLRGWRRE
LMGQALLDSL AAPGEPS