Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1563 |
Symbol | |
ID | 3367063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1760015 |
End bp | 1761148 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637651904 |
Product | ribonuclease D |
Protein accession | YP_234649 |
Protein GI | 66044808 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.459041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00529979 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGGCCATCG ATATTCACTG GATTCGCGAC GACGACAGCC TCGCCCGGCA TTGCGCACAA TGGCAGTCAC TGCCTTTCGT GGCGCTCGAC ACCGAGTTCA TGCGGGTCGA CACTTTTTAT CCGATCGCCG CGCTGCTGCA GATCGGCGAC GGGCAGAGCG CCTGGCTGAT TGATCCGTTG CTGATCAACG ACTGGCGGCC GCTGTCTGCG TTGCTCGAAA ACCCCGACGT CATCAAAGTG GTGCATGCGT GCAGCGAAGA CCTCGAGGTG TTGCTGCGCC TGACCGGCAG CCTGCCGGTT CCGCTGTTCG ATACCCAGTT GGCAGCCGCC TACCTGAACC TCGGTTTTTC CATGGGCTAC TCGCGCCTGG TGCAGGAGGT CCTCGACATC GACCTGCCCA AGGGCGAAAC CCGTTCCGAC TGGCTGCAAC GCCCGTTGTC GGAAACGCAG GTCAGCTACG CTGCCGAAGA CGCCGTGCAC CTGGCCGAGC TATTCACCAT CCTGCGCCCG CGCTTGTCCG ACGACAAATA TGCCTGGCTG CTGGATGACG GTGCCGAACT GGTCGCCAAC CTGCGCCGTG AGGTGGACCC GTACGAGGTG TATCGCGACG CCAAGCTGGC CTGGAAGCTG TCCCGCGCCC AGCTGGCGGT GCTGCGCGAG TTGTGTGCCT GGCGTGAGCG TGAGGCGCGC GCCCGTAATC TGCCGCGCAA CCGTATCGTG CGTGAGCACT CGCTCTGGCC ATTGGCCAAG ACCCAGCCGG ACAACCTCGG CGCGCTGGCG CGGATCGAGG ACATGCACCC GCGTACGGTC CGTCATGACG GCGAGTTTCT GCTCGAGCTG ATCAAGACCG CGAGCGTGCT GCCTCCCGAA GAGTGGCCAC CTGCGTTGCC CGAGCCATTG CCCATCGATG CGGCCGGGTC GATCAAGCGT CTGCGTGCAA TCGGCCAGCA ATACGCCGAG CAACTGGACA TGGCGCCGGA GCTGATGCTG CGCAAGAAGA CCCTCGAAGC CCTGCTCAAG AGCGGCTACC CCGACGGTCC TTACCAATTG CCCGACTCGC TGCGTGGCTG GCGTCGCGAG TTGATGGGTC AGGCGCTGCT GGACAGCCTG GCCGCCCCCG GAGAACCGTC TTGA
|
Protein sequence | MAIDIHWIRD DDSLARHCAQ WQSLPFVALD TEFMRVDTFY PIAALLQIGD GQSAWLIDPL LINDWRPLSA LLENPDVIKV VHACSEDLEV LLRLTGSLPV PLFDTQLAAA YLNLGFSMGY SRLVQEVLDI DLPKGETRSD WLQRPLSETQ VSYAAEDAVH LAELFTILRP RLSDDKYAWL LDDGAELVAN LRREVDPYEV YRDAKLAWKL SRAQLAVLRE LCAWREREAR ARNLPRNRIV REHSLWPLAK TQPDNLGALA RIEDMHPRTV RHDGEFLLEL IKTASVLPPE EWPPALPEPL PIDAAGSIKR LRAIGQQYAE QLDMAPELML RKKTLEALLK SGYPDGPYQL PDSLRGWRRE LMGQALLDSL AAPGEPS
|
| |