| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1517 |
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| Symbol | |
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| ID | 3367016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1703673 |
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| End bp | 1705409 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637651859 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_234605 |
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| Protein GI | 66044764 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.201876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGC CCTTCATGCG TCAGACCGCT CTGAGTCTCG CTGTTCTAAC GGCATCAGCA
TGCTCAGTGC AACGGGTGGA TGAAGCCGCT GCACGGGCAG AGGCTACCGC CGATTCTGCC
GGCCGTTACG CGGCTATCCA GCGTAACAAG CAGCAACAGG AACGTCGGGA CACAGTGATA
TTCAGCGACA AACCCTGGGT TTCAACGCAG CCAGTTGTTG CGAGACGAGG CATCCCCACC
AAGTATGACT GTGAGGTCGC ATATAGGCCT GCTGGCAGTG TCGGAATTGC TGAAATTGCC
CAGTACATTT CCAGACAGTG CGGGATCCCT GTCCTGGTCT CGCCGGATGC GCTCAATCCT
GGCCTGCTGA ACGCTAATGC ACCTGCACAG GGCAACAATG CGCCTCCAAT CAGCACGGCC
CCCAACCCTG ATAGCCTGGC CGGGTTGCTG CCTGCAGGTA TCACGGGCGG CTCCAACCTG
GCGCAGGCCT CTCAGGGGAG AAGTTCTGAC TTCGCATCCA TGCTGACACC GAACCTCGTC
AGTGGGTTGC GCTTCACAGG GAAAGCCTCG GGTCTGCTGG ATGAGGTCAC CGCGCGGCTG
GGACTCACCT ATCGATTCAA TCCCACCTCA CGGTCAGTGC AGGTCAGCTA TTTCGACACC
AAGGTGTTTG ACGTCTACGC ATTTGGAGAC GTGCAGGAAA TCAAAAGCAC CGTCAGATCC
GGTATGACCA CCTCCTCAGG TTCGGGAAGT GGTTCGTCGA GCGGATCATC GTCAGGTAGC
AGTTCCTCAG GCGTTTCGGG TGACTCGGGC AGCAACCAGA GCACTACAGT CACTCTCAAC
ACATCGATCC TGACTGACAT CCAGAGCAAC GTGAGGGCAA TGCTGAGTAC CTCGCCGCCT
GGTCGCATGT ATCTGTCACC GTCGACCGGG ACGTTGACCG TGACTGACCG GCCCGACGTG
CTTTCGAACG TTGAGACCTA TCTGGCCAAG ACCAACCACG CGATCACCCA ACAAGTGCTG
TTCAATGTGA AGGTGTTTGA GGCGACGCTG ACCGACACCG ATCAGCTGGC TTTGAACTGG
GCGGCCGTCT ACAACTCGCT GAGCACAAAG TGGGGCCTGT CTCTCTCGAA TACTGTGCCA
GGCATCAGCT CCAGCGCAAT CTCGGGCTCT GTTGGCATTG TCGATACGGC CAACTCTGCC
TGGGCAGGTT CGAACGCGAT CATCCAGGCA ATCGCAGAGC AGGCCCGGAT CTCGAATGTT
CGATCGCCGT CTGTGACCAC ATTGAATCTG CAGCCTGCTC CGCTGCAGAT CGGCAACGTC
CAAGGCTACA TCCCATCGGT TCAGACCAAC ACCACGGCGT CAGTGGGCTC CAGCACGGCA
ATTACTCCGG GCACTATCAC CTCCGGCTTC AACATGACAC TGCAGCCTCG CTTGATGGAC
GATGACGAGA TGTTGCTCAT GGTATCGATC AATATGAGCT CCAAACCTAC CTTCGAGCCA
TTCACGAGCA ACGGCTCCAG CGTCCAGATC CCCAACTACG ATGCGAAAAG TTTGTCACCG
AAGGTGAAGC TGCGCAGCGG TCAGACATTG ATCCTGTCGG GCTTTGAGGA GCTCAGCGAC
AACACGGACA AGATCGGCAC AGGTTCCCCC GGATTCTTCG GGCTTGGAGG TGGGCGTAAG
CGCACCTCGT CAAAAAGCGT TCTGGTAGTG CTGATCACCC CGATTGTGAC CAACTGA
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| Protein sequence | MSMPFMRQTA LSLAVLTASA CSVQRVDEAA ARAEATADSA GRYAAIQRNK QQQERRDTVI
FSDKPWVSTQ PVVARRGIPT KYDCEVAYRP AGSVGIAEIA QYISRQCGIP VLVSPDALNP
GLLNANAPAQ GNNAPPISTA PNPDSLAGLL PAGITGGSNL AQASQGRSSD FASMLTPNLV
SGLRFTGKAS GLLDEVTARL GLTYRFNPTS RSVQVSYFDT KVFDVYAFGD VQEIKSTVRS
GMTTSSGSGS GSSSGSSSGS SSSGVSGDSG SNQSTTVTLN TSILTDIQSN VRAMLSTSPP
GRMYLSPSTG TLTVTDRPDV LSNVETYLAK TNHAITQQVL FNVKVFEATL TDTDQLALNW
AAVYNSLSTK WGLSLSNTVP GISSSAISGS VGIVDTANSA WAGSNAIIQA IAEQARISNV
RSPSVTTLNL QPAPLQIGNV QGYIPSVQTN TTASVGSSTA ITPGTITSGF NMTLQPRLMD
DDEMLLMVSI NMSSKPTFEP FTSNGSSVQI PNYDAKSLSP KVKLRSGQTL ILSGFEELSD
NTDKIGTGSP GFFGLGGGRK RTSSKSVLVV LITPIVTN
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