| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1514 |
|---|
| Symbol | |
|---|
| ID | 3367013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1700093 |
|---|
| End bp | 1701724 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637651856 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_234602 |
|---|
| Protein GI | 66044761 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG CGGTACGAAT TGAGCCAGAC ATTGAGGCTG ATCCGTTGGC ACGCCAGGTC
GCCCGGCCGA CCGCAGTCGT GCAACCGATC ACCATTGCCA TGCAATCTGA CGTGGTCGGA
ACCGTCCTGA CTGCGGAGGG AAATCGGTGG GGGGACATCA CCAGCGAGTT GCGTCAGCTC
GTTGCCTTGT TAGCACCTGC CCCAGAGGCT GAAGAAGCAG AATTGCTCGT GTCGTCTCAG
CACATGCACG ACCCTTATGT GATGGCATTT ATGGACCGCC TGGACCGAGC CGGCGTGCCG
TTTCAGACCA TCAGCAGCAC GCTCAGCGAC ATCAAGTCTC TGTATCAGAA TGCGGGTAAA
GCTTTCGCCG GATCTATAGA CAGTACCCAG CGTCAACAAG AGGTGATTCG TATCATCGGC
GCGGCCCATG CACGACGTGC TTCCGACGTT CACTTCATCG TTGGCCACGA AATCACCTAC
ATCAAGTTTC GTGAGGACGG TCTCTTGCGG GAGTACGGGC AGATCCAGAG CGCCGTAGGA
AACGAGCTCT GTTCTTCACT TTTCAACTCA ATGTGTGACG TCAAATCTGA GGGCTACTAT
CAACCGGAAC TGAAACAAGA TGCGCGCATG GCTCGCACCT TCCTCGATCA ATTGGGACTG
TCAGGGGCCC GTGTAGCAAC CCGCCCTCTC GTCGAAGGGC CTTTAATGGT GCTGCGACTG
ATTTATGACG ATCAGGAGAA ACAGTCCGTC GACGATCTGG GGTTTCTGCC AGAACAGAAT
TTGCTGTTCA AGCGGCTGAG AAGTCTTCCT TACGGCGTGA TCATATTGAC CGGTCCGACT
GGATCAGGGA AATCGAAGTC GCTCCAGGTG CAGATCAACC TTCTGGCTGA AGAGTGCAAA
GGCACAAAAC ATATCCTGAC CGTTGAGGAC CCGCCCGAAT ATCCGATGCG TGCAAATCAG
TCCCCTCTTG GCAGCAATGA GTCATGGGGA GAATCCATTA CAAACTCCGT GCGACTCGAC
CCCGACATAC TGATGTATGG GGAGATTCGA GACCTTGAAT CAGCTCAGGG GGCACTGCGA
GGGGGGATGA CCGGCCACCT GGTTTTATCG ACTCTGCACA CCAACAACGC TGTAGCAGCA
ATTCCTCGCC TGATCGACAT GGGGGCTGAT ACAAGCCTGG TCACCGACCC AACACTCATT
GTCGGCCTTA TCAACCAGTC ACTGCTGCCA ACGCTGTGCA AGAAGTGTCG CGTGCCTGCG
CGCAGCCAGA TCAGTACCTT GGATCCGCAG CTGGTCGAGC GGCTCGAAAA GATGACCGTG
CTGGATCAGG TCTATCTGGC TGGGCCGGGT TGCTCTCTAT GCCGTGACGG GGTGAACGGC
AGGGCCGCTG TCGCCGAGAT TCTTCTCCCG ACCCACCGGT TCATGGAGGA GATCCGAAAA
AATGGCCCAA GCGCTGCGCG CCAGTATTGG GTCAAGCACA TGGGTGGTAT CACGAAGGTT
GCCCACACGC TCATCAAGAT AAATACAGGA CTGATTGACC CGCGCATGGC AGAGGCCGTA
GTCGGTCCAT TGGATTTTGA CAGCTACATG CTGGATGCCG AAGCGCCTGA GGCAGAAGTC
CATGCTCAGT AA
|
|---|
| Protein sequence | MSGAVRIEPD IEADPLARQV ARPTAVVQPI TIAMQSDVVG TVLTAEGNRW GDITSELRQL
VALLAPAPEA EEAELLVSSQ HMHDPYVMAF MDRLDRAGVP FQTISSTLSD IKSLYQNAGK
AFAGSIDSTQ RQQEVIRIIG AAHARRASDV HFIVGHEITY IKFREDGLLR EYGQIQSAVG
NELCSSLFNS MCDVKSEGYY QPELKQDARM ARTFLDQLGL SGARVATRPL VEGPLMVLRL
IYDDQEKQSV DDLGFLPEQN LLFKRLRSLP YGVIILTGPT GSGKSKSLQV QINLLAEECK
GTKHILTVED PPEYPMRANQ SPLGSNESWG ESITNSVRLD PDILMYGEIR DLESAQGALR
GGMTGHLVLS TLHTNNAVAA IPRLIDMGAD TSLVTDPTLI VGLINQSLLP TLCKKCRVPA
RSQISTLDPQ LVERLEKMTV LDQVYLAGPG CSLCRDGVNG RAAVAEILLP THRFMEEIRK
NGPSAARQYW VKHMGGITKV AHTLIKINTG LIDPRMAEAV VGPLDFDSYM LDAEAPEAEV
HAQ
|
|---|
| |