Gene Psyr_1508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1508 
Symbol 
ID3367007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1694121 
End bp1695080 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content61% 
IMG OID637651850 
ProductPhage integrase:Phage integrase, N-terminal SAM-like 
Protein accessionYP_234596 
Protein GI66044755 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGGAG AATTGATCTC AATTGAGGAT GGCGGACGTC GGCTTACGGC GGCGGAGTTC 
CAGCAACTGA CGGCTGTACC CTCAGCCGTG GAGTGGTTTG CCAATATCGA TAATCCACGT
ACCCGCCGGG CGTATCAGAT CGACCTACAA GACTTCTGCA GTTTCGTCGG CTTGGCCGGG
GCCGAAGAGT TTCGGGCCGT GACGCGCGCA CATGTCCTGG CCTGGCGCGC TCGGTTGGAG
AAGCGTGGTC TGGCCGGAGC AACGATCCGG CGTAAACTCG CCGCGCTTGC CAGCCTGTTT
GATCATCTGC TCGAGAACAA TGCAGTGGCA GGGGGCAATC CGGTCCACGG CGTCAAGCGG
CCCCGGATCG AAAGCAACGA AGGGAAGACG CCCGCGCTCG CGGACCACCA GGCCAAGGCG
CTTCTCGATG CGCCGCCGGC TGACAGCCTC AAGGGACTAC GAGATCGTGC TGTGCTGGCC
GTGCTGCTGT ACCACGGCCT GCGCCGGGAG GAGGGCGCGC AGTTGAAAAC CAGCGACTTG
CAGGAGCGAC GGGGCATTAA GCACCTGCGG GTGAACGGCA AAGGCGGCAA GCTGCGCTGG
CTACCGCTGC ACCCCGTGGC CGCCGAACGT ATCTACGCAT ATATGGAAAA GGATCTTGAG
CGAGGAGCAG GGAATGGGTC GCTGTTTAGG TCACTACGAG GTCGCGCCTC TGGTACCGGG
CTGAGCGCCG ATGGCATTTA TAAGATCGTG TGTCATTGGG CGATGTCTGC CGGCATCAAG
GTTGATGGTC TGGGCGTCCA TGGTTTGCGG GCCACGGCGG CTACAAACGC GCTTGAGCAT
GACGCGGACA TTGCCAAGGT GCAGATCTGG CTGGGGCACG CAAACATCAG CACGACGCGT
TTGTATGATC GGCGCGGCCA GCGACCGGAA GACTCTCCGA CGTTTAAAGT CAAATACTGA
 
Protein sequence
MPGELISIED GGRRLTAAEF QQLTAVPSAV EWFANIDNPR TRRAYQIDLQ DFCSFVGLAG 
AEEFRAVTRA HVLAWRARLE KRGLAGATIR RKLAALASLF DHLLENNAVA GGNPVHGVKR
PRIESNEGKT PALADHQAKA LLDAPPADSL KGLRDRAVLA VLLYHGLRRE EGAQLKTSDL
QERRGIKHLR VNGKGGKLRW LPLHPVAAER IYAYMEKDLE RGAGNGSLFR SLRGRASGTG
LSADGIYKIV CHWAMSAGIK VDGLGVHGLR ATAATNALEH DADIAKVQIW LGHANISTTR
LYDRRGQRPE DSPTFKVKY