| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1463 |
|---|
| Symbol | |
|---|
| ID | 3366962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1649828 |
|---|
| End bp | 1652086 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637651805 |
|---|
| Product | DEAD/DEAH box helicase |
|---|
| Protein accession | YP_234551 |
|---|
| Protein GI | 66044710 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.330128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACC TGCCTTTGGC TGCGCCTGCA GACCACCCTT GTGTACCAAC TTTGAACATC
GGGCTCACTG AGTTTATCGA AGAGTTTGGC GACGAACTCC TGGAGTCACT CAACCGCTCC
AACCCACCGG TCTACGCCGG CATCGACAAT CCGGCTCGGC AGTGGGTGCT GGACGGCCTC
AAAAGACAGC CCTTCCCTGC CCAAGCTCAA GTGGTCCAGG CAATTGCCGC GCTTTTGCTC
GATCAGAATG AGCAGGCTGG CATCATCAAT GCCGAGATGG GGACAGGCAA AACAATGATG
GCCATCGCTC TCGCTGCAGT CATGCATGGA TCTGGTTATC GCAGGACGAT GGTCATCGCG
CCTCCGCACC TGGTCTACAA GTGGCGGCGC GAGATCCTCG AAACCATCCC TGACGCTCGC
GTCTGGGTGC TCAACGGACC GGATACCCTG GTCAAGCTGC TGAAGCTGCG CGATCAACTG
GGTGATACCT ACGACGGACG TCAGGAGTTC TTTATTCTCG GCCGTGTGCG GATGCGGATG
GGGTTCCACT GGCGTCTGGC CTTTTGGCAA CGACGTGCCG GCGGTGGTAG GAGCCTGGCA
GCGTGTCCAG ATTGTGGACG TCTGCTCCAG GACCAGGAAG GCAATCTGAT CACTGCTGAG
GAATTTCAGC GTGAAGAGCG ACGTCGACGC TGCGACCACT GTGATGCCGC TTTATGGACG
CTGATGCGTC CGGGCAAATC GGATGGCGGC AGCCGCCGTA ACACGATCCT AAAGTCGATG
TGTCGCATCC CTACAATCGG ACCTGTTCGT GCAGAACGGC TTTTATCTGA CTTCGGCGAA
GACTTTCTCG CCTCGATGCT TCTGGACAAT GTCTCTGAGT TCATCAACCT GATGGACGCC
AAAGGCAATT TCATCTTCAG CGACCGCCAA GCCAAGCGCA TGGAGCGTGC GATGGCCAAC
ATCGAGTTCG GGTTCGGCGA GGGGGGTTAC CAACCCACCG AGTTCATCAA GCGCTACCTG
CCTGATGGGT GCTTCGACCT ACTGGTCGTG GACGAGGGGC ATGAGTACAA AAACAGTGGA
TCGGCACAAG GTCAGGCTAT GGGCGTGCTC GCAGCCAAAG CACGAAAGAC TGTGCTGCTG
ACCGGCACTC TCATGGGCGG CTATGCGGAC GATCTGTTCT ACCTACTGTT CCGGATCCTC
ACCAGACGTA TGATCGAGGA CGGCTATCAG CCCAACGCGC GAGGAAGCAT GGCGCCGGCG
GCGATGTCTT TTATGCGGGA TCATGGGGTA TTGAAGGATA TCTACACCGA GCGTGATGGC
AGTTCTCACA AGACTGCCAA AGGCAAGAAA CTCTCAGTGC GGACGGTCAA AGCTCCGGGG
TTCGGCCCGA AAGGCATTCA CCGCTTCGTT CTACCCTTCA CTGTGTTCCT GAAACTCAAG
GATATCGGCG GCAACGTGCT ACCTGGTTAC CGGGAGGAGT TCATTGACGT ACCGATGTCT
CCAGACCAGG AGGCGGCTCA CCGAAAGCTT GCCCAGACAT TGACCGTCGA GCTTCGGCAG
GCGCTGGCCC GAAGAGATAC GACGCTGTTA GGGGTGGTGT TGAACGTGCT GTTGGCATGG
CCGGACTGCT GCTTTCGACC TGAGGTGGTA AAACATCCTC GATCCAGAGA CACGTTGGCT
TTCGTGCCGT CGGTCTTCGA TGACGACGAG CTCATGCCGA AGGAACAGGC CCTTCTGGAC
CTATGTCTTG CTGAAAAAGC CCGGAACCGC AAGGTTCTGG CCTACTCGGT TTACACGGGT
ACCAGAGACA CCACGAGCCG CATGAAGCGG GTGCTCGAGC AATCGGGGCT GAAGGTGGCA
GTGCTGCGTG CATCAGTGGA CACCGCCAGG CGCGAGGACT GGATCCTCGA CCAGGTTGAT
CGAGGTGTCG ACGTACTGAT CACCAACCCG GAGCTCGTAA AAACAGGTCT GGATCTGCTC
GACTTTCCGA CCATTGCCTT CATGCAGACT GGTTACAACG TCTACACGGT GCAACAGGCG
GCAAGGCGCT CATGGAGGAT CGGACAGAAG CAGGACGTCC GAGTGATCTT TTTCGGCTAC
ATCGGCAGCT CTCAGATCAC CTGCCTGCAG CTGATGGCCA AGAAGATCGC CGTATCGCAG
AGCACTTCAG GGGATGTTCC AGAGTCTGGA TTGGATTCAC TGAACCAGGA TGGCGATTCC
GTAGAGATGG CACTCGCCAG ACAACTCATC AACGCTTGA
|
|---|
| Protein sequence | MNDLPLAAPA DHPCVPTLNI GLTEFIEEFG DELLESLNRS NPPVYAGIDN PARQWVLDGL
KRQPFPAQAQ VVQAIAALLL DQNEQAGIIN AEMGTGKTMM AIALAAVMHG SGYRRTMVIA
PPHLVYKWRR EILETIPDAR VWVLNGPDTL VKLLKLRDQL GDTYDGRQEF FILGRVRMRM
GFHWRLAFWQ RRAGGGRSLA ACPDCGRLLQ DQEGNLITAE EFQREERRRR CDHCDAALWT
LMRPGKSDGG SRRNTILKSM CRIPTIGPVR AERLLSDFGE DFLASMLLDN VSEFINLMDA
KGNFIFSDRQ AKRMERAMAN IEFGFGEGGY QPTEFIKRYL PDGCFDLLVV DEGHEYKNSG
SAQGQAMGVL AAKARKTVLL TGTLMGGYAD DLFYLLFRIL TRRMIEDGYQ PNARGSMAPA
AMSFMRDHGV LKDIYTERDG SSHKTAKGKK LSVRTVKAPG FGPKGIHRFV LPFTVFLKLK
DIGGNVLPGY REEFIDVPMS PDQEAAHRKL AQTLTVELRQ ALARRDTTLL GVVLNVLLAW
PDCCFRPEVV KHPRSRDTLA FVPSVFDDDE LMPKEQALLD LCLAEKARNR KVLAYSVYTG
TRDTTSRMKR VLEQSGLKVA VLRASVDTAR REDWILDQVD RGVDVLITNP ELVKTGLDLL
DFPTIAFMQT GYNVYTVQQA ARRSWRIGQK QDVRVIFFGY IGSSQITCLQ LMAKKIAVSQ
STSGDVPESG LDSLNQDGDS VEMALARQLI NA
|
|---|
| |