Gene Psyr_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1397 
Symbol 
ID3366894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1582602 
End bp1583666 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content61% 
IMG OID637651738 
ProductDNA polymerase IV 
Protein accessionYP_234486 
Protein GI66044645 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAGC GCAAAATCAT CCACATCGAC TGTGACTGCT TTTATGCAGC CATTGAAATG 
CGTGACGAGC CCGACCTCGC CGGCAAACCG TTGGCGGTAG GCGGCTCTGC GGAGCGGCGC
GGGGTGATTG CGACCTGTAA TTACGAGGCG CGCGCCTATG GCGTGCGTTC GGCCATGTCG
TCCCGGCATG CGCTCAAGCT CTGCCCGGAC CTGACCATCG TCAAGCCGCG CATGGATGCC
TATAAAGAAG CGTCGCGGGA AATCCACACG ATCTTTCGCG ATTACACCGA CCTTATAGAG
CCGCTGTCTC TGGATGAGGC CTTTCTGGAT GTGTCCGAGG CCGGGCACTT TTCCGGCAGC
GCCACGCGCA TCGCGCAGGA CATCCGTCGT CGGGTCTCGA ATCAATTGCA CATCACCGTG
TCGGCGGGCG TTGCGCCCAA CAAGTTTCTC GCCAAGATCG CCAGCGACTG GAAAAAGCCC
AACGGGTTGT TCGTCATTAC GCCGGATCAG GTCGAGGAAT TCGTCGCTTC CCTGCCAGTC
ACCAAGCTTC ATGGCGTAGG CAAAGTCACC GCAGACAAAC TCGGCCGGCT GGGTATCGTC
GACTGCGCCG ACCTGCGAAG CCGCAGCAAG CTCGCGCTGG TCCGGGAGTT CGGCAGCTTC
GGTGAGCGCC TCTGGAGTCT GGCGCACGGC ATTGATGACC GACCGGTGCA GAATGACAGC
CGACGTCAGT CAGTCAGCGT TGAAAATACC TACGACACGG ATCTGCCTGA TCTGGCGGCC
TGCCTGGAAA AGCTGCCCGA CCTGCTGGAA ACCTTGAGTG GCCGGATGGC CAGAATGGAA
GGGCAGTACC GGCCCGGCAA GCCGTTCGTC AAGGTGAAGT TTCATGACTT TACGCAGACG
ACTCTGGAGC AGTCCGGAGC CGGAAGGGAT CTGGGCAGTT ATGAACAGTT GCTGGCTCAG
GCGTTCGCCC GCGGTGGCAA GCCGGTCAGG TTGCTGGGCA TAGGCGTGCG CCTGCACGAC
CTGCGTGCAG CCCATGAGCA GCTGGAATTG TTCTCTCGAC AATGA
 
Protein sequence
MTQRKIIHID CDCFYAAIEM RDEPDLAGKP LAVGGSAERR GVIATCNYEA RAYGVRSAMS 
SRHALKLCPD LTIVKPRMDA YKEASREIHT IFRDYTDLIE PLSLDEAFLD VSEAGHFSGS
ATRIAQDIRR RVSNQLHITV SAGVAPNKFL AKIASDWKKP NGLFVITPDQ VEEFVASLPV
TKLHGVGKVT ADKLGRLGIV DCADLRSRSK LALVREFGSF GERLWSLAHG IDDRPVQNDS
RRQSVSVENT YDTDLPDLAA CLEKLPDLLE TLSGRMARME GQYRPGKPFV KVKFHDFTQT
TLEQSGAGRD LGSYEQLLAQ AFARGGKPVR LLGIGVRLHD LRAAHEQLEL FSRQ