Gene Psyr_1396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1396 
Symbol 
ID3366891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1578990 
End bp1581632 
Gene Length2643 bp 
Protein Length880 aa 
Translation table11 
GC content62% 
IMG OID637651735 
Producthypothetical protein 
Protein accessionYP_234485 
Protein GI66044644 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGACA ACATGTCCGA TTCCAATGAA ACCATTGATG CAGAGCAACC CGTCAGCCCC 
CCGCGCCATA ACTGGCGGGA GCTGCTGAGC AAATACCGAC AGCCCATCGG GCTGGCGGTG
ATGCTGCTGT TGTTCAGCCT GGCCCTTATA GCCTGCCGCC ACATGCTGGT CGAAATGGAC
TGGTATGCGC TGCACGACTC GCTGTTCGCA GTCCCCCTGC CCGCCCTGGG CGGTGCGCTG
CTCGCGGCAA TCGTCGGCTA TATCATTCTG ATGGGCTATG AACTGTCCGC CAGTCGATAC
GCCAATGTCG ACCTGCCTAT CAAGACGCTG CTTCTCGGCG GCTTCACCTC ATTTGCCATC
GGCAATGCGG TCGGCCTGTC GATGCTGTCC GGTGGCTCGG TGCGCTACAG GCTTTATTCA
CGCCATGGCG TAGGCGCAAT TGAAATCGCC CGCATGACCG TGTTCGCCAG CCTGTCACTG
GGCTGTGCGC TGCCGCCGCT GGCTGCACTG GCCACGCTGA GCAACCTGTC AGGCGCGTCA
CTGGCCCTCA AGCTTCCCGT CGACGTGCTG GCTGTAGTCG CTACAGCGGT GTTGATCGGC
AGCCTGCTGC TGGCGGTGTT AATCTACCGT CGACGCCTGC CGGAACAGGA CATCCCGCAC
AATATTCTGG TTCGTCTCGG TCGTCGCACC TTGCGCCTGC CGGATTTGAA GCTGACGCTG
ATTCAGCTGG TGATCACCGC GCTGGACGTC GCCGCCGCAG CGATGGTGCT GTACCTGCTG
CTGCCGCATG CGCCGCCGCT GGGTGCATTC ATCCTTATCT ACCTGCTGGC GCTCGCTGCT
GGCGTGCTCA GCCATGTGCC TGGTGGCGTC GGCGTGTTCG AGGCGATTCT GCTCGCAGCC
TTTGCCAACG AACTGGGTGC CGCCCCGCTC GCCGCTGCAC TGCTGCTGTA CCGCCTGATC
TACGTGATCC TGCCGCTGCT GCTGGCCTGC CTTACCCTGC TGTTCACCGA GGCTCAGCGC
CTGCTACCGA CCCGGCAGGC CATGCGCGTC GCCTCAGGGC TGGCGGCACC GATTCTGGCA
CTACTGGTTT TCTTGTCGGG GGTGGTGCTG CTCTTCTCTG GTGCCACCCC TGAAATCGAT
ACCCGTCTGG AAAACGTCGG CTTCATGATC CCGCATCGAC TGATCGATGC GTCGCACTTT
GGAGCCAGTC TGGTGGGCGT GCTGTGCCTG CTGCTCGCCC AGGGCCTGCG TCGCCGGCTG
TCGGCTGCCT GGATGCTGAC CTCTATCCTG CTGCTGGTAG GTGCAGTGCT GTCGATACTC
AAGGGCTTCG ACTGGGAAGA AGCCAGCATG CTGCTGCTGA CCGCCTGCCT GCTGCTGACC
TTCCGCCGTT CGTTCTACCG TCCAAGCCGC CTGCTAGAGC TGCCGTTCTC GCCGGTCTAC
CTGATTGCCA GCATCTGTGT GGTCGGCGCC TCGATCTGGC TGCTGCTGTT CGCCTATCAG
GACGTGCCCT ACAGTCACCA GTTGTGGTGG CAGTTCACCC TCGATGCAGA CGCCCCGCGC
GGCCTGCGTT CGGCGCTCGG CAGCGCCGTG CTGCTGGTAG TGGTTTCGCT GACCTGGTTA
CTGCGTACTG CCAGACCGGT CATCAAGCTG CCCGACGCCG AGGATCTGGA CAAGGCGGCC
GAGATCCTCA AGGCCTCCAA ACAGCCCGAT GGCGGCCTGG TGCTGACCGG CGACAAGGCG
ATCCTGTTCC ATCCGGCCGG CAATGCGTTC CTGATGTACT CGCATCGCGG CCGCAGTCTG
GTAGCACTTT ACGACCCGAT CGGCCCCACA CAACAGCGTG CCGAGCTGAT CTGGCAGTTC
CGCGACCTGT GCGACGTGCA CCATGCGCGC CCGGTGTTCT ATCAGGTACG TGCAGAAAAC
CTGCCGTTCT ACATGGACAT CGGTCTCACG GCCATCAAGC TGGGTGAAGA AGCGCGCGTC
GACCTGCATC GCTTCGACAT CGACGCCAAG GGCAAGGAGA TGAAAGACCT GCGTTACACC
TGGAACCGGG GTGGCCGCGA CGGTCTTTCG CTGGAGATCT ACGAACCGGG CCAGGCGCCG
ATCGACGAGC TGAAAGTGAT TTCCGACGCC TGGCTGACGG GCAAGAATGT CCGCGAAAAA
GGCTTTTCGC TGGGCCGTTT CAGCACTGAG TACCTGAAGT ACTTCCGCAT TGCCATCGTG
CACTTCCAGG GCAAGCCGGT CGCGTTCTCC AACCTGCTGG AAACCACCAG CCCGGAACTG
GCCAGCCTGG ACCTGATGCG CTCCCACCCG GATGCACCCA AGCTGACCAT GGAATTCATG
ATGGTCGGCC TGATTCTGCA TTACAAAGCC CAGGGCTACG CGCGCTTCAG CCTGGGCATG
GTGCCTTTAT CGGGCCTGCA GCCACGACGC GGCGCACCCA TCACCCAGCG TCTGGGTTCG
ATGATCTTCC GCCGTGGCGA ACAGCTGTAC AACTTCCAGG GGCTGCGTCG CTTCAAGGAC
AAGTTCCAGC CCGATTGGGA ACCTCGTTAT ATGGCCGTGC CTGCCGGACT CGATCCGCTT
GTGGCACTGG CTGACACCGC CGCCCTGATT GCGGGCGGCC TGACTGGATT GGTGAAACGC
TGA
 
Protein sequence
MRDNMSDSNE TIDAEQPVSP PRHNWRELLS KYRQPIGLAV MLLLFSLALI ACRHMLVEMD 
WYALHDSLFA VPLPALGGAL LAAIVGYIIL MGYELSASRY ANVDLPIKTL LLGGFTSFAI
GNAVGLSMLS GGSVRYRLYS RHGVGAIEIA RMTVFASLSL GCALPPLAAL ATLSNLSGAS
LALKLPVDVL AVVATAVLIG SLLLAVLIYR RRLPEQDIPH NILVRLGRRT LRLPDLKLTL
IQLVITALDV AAAAMVLYLL LPHAPPLGAF ILIYLLALAA GVLSHVPGGV GVFEAILLAA
FANELGAAPL AAALLLYRLI YVILPLLLAC LTLLFTEAQR LLPTRQAMRV ASGLAAPILA
LLVFLSGVVL LFSGATPEID TRLENVGFMI PHRLIDASHF GASLVGVLCL LLAQGLRRRL
SAAWMLTSIL LLVGAVLSIL KGFDWEEASM LLLTACLLLT FRRSFYRPSR LLELPFSPVY
LIASICVVGA SIWLLLFAYQ DVPYSHQLWW QFTLDADAPR GLRSALGSAV LLVVVSLTWL
LRTARPVIKL PDAEDLDKAA EILKASKQPD GGLVLTGDKA ILFHPAGNAF LMYSHRGRSL
VALYDPIGPT QQRAELIWQF RDLCDVHHAR PVFYQVRAEN LPFYMDIGLT AIKLGEEARV
DLHRFDIDAK GKEMKDLRYT WNRGGRDGLS LEIYEPGQAP IDELKVISDA WLTGKNVREK
GFSLGRFSTE YLKYFRIAIV HFQGKPVAFS NLLETTSPEL ASLDLMRSHP DAPKLTMEFM
MVGLILHYKA QGYARFSLGM VPLSGLQPRR GAPITQRLGS MIFRRGEQLY NFQGLRRFKD
KFQPDWEPRY MAVPAGLDPL VALADTAALI AGGLTGLVKR